{"id":"W4394580130","doi":"10.1038/s41590-024-01778-0","title":"Large-scale phenotyping of patients with long COVID post-hospitalization reveals mechanistic subtypes of disease","year":2024,"lang":"en","type":"article","venue":"Nature Immunology","topic":"Long-Term Effects of COVID-19","field":"Medicine","cited_by":91,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University and Génome Québec Innovation Centre; St. Thomas Hospital","funders":"European and Developing Countries Clinical Trials Partnership; NIHR Leicester Biomedical Research Centre; NIHR Imperial Biomedical Research Centre; Manchester Biomedical Research Centre; National Institute for Health Research Health Protection Research Unit; University of Warwick; University of Oxford; Blood Cancer UK; Grifols; Versus Arthritis; Public Health England; Rosetrees Trust; Imperial College London; Wellcome Trust; Asthma and Lung UK; Diabetes UK; Cystic Fibrosis Trust; Kidney Research UK; Medical Research Council; Department of Health and Social Care; Insmed; National Institute for Health and Care Research; Department for International Development; AstraZeneca; UK Research and Innovation; Strong; British Heart Foundation; British HIV Association; Gilead Sciences","keywords":"Coronavirus disease 2019 (COVID-19); Disease; Coronavirus; Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2); 2019-20 coronavirus outbreak; Medicine; Phenotype; Pandemic; Immunology; Virology; Biology; Infectious disease (medical specialty); Outbreak; Pathology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001744557,0.0001688719,0.0003824796,0.0002459994,0.00003843513,0.000008610735,0.000133097,0.000291821,0.0001039465],"category_scores_gemma":[0.00108838,0.0001299109,0.0000847642,0.0003278075,0.0001155067,0.0001070714,0.00006792439,0.0003735275,0.00001023216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009803608,"about_ca_system_score_gemma":0.0002664674,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009764895,"about_ca_topic_score_gemma":0.00001160277,"domain_scores_codex":[0.9988291,0.00008614577,0.0002869183,0.0003000987,0.0002663243,0.0002314202],"domain_scores_gemma":[0.9986702,0.0003172969,0.000145123,0.0003816449,0.0003954729,0.00009031102],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01711585,0.001974643,0.8426717,0.01773945,0.002216206,0.0004430246,0.003374107,0.0000747274,0.05048421,0.05872276,0.001084841,0.00409848],"study_design_scores_gemma":[0.003784344,0.001980538,0.9816703,0.00205234,0.000907506,0.00001129471,0.00009312991,0.0005201632,0.004851247,0.002902526,0.0009099467,0.0003166974],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806958,0.009277898,0.007070494,0.00120213,0.0005730653,0.0008266291,0.0001596114,0.0001080355,0.0000862952],"genre_scores_gemma":[0.998276,0.00004181295,0.0003292104,0.0006816444,0.00004821909,0.00001506608,0.0004772549,0.00003864043,0.0000921386],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1389986,"threshold_uncertainty_score":0.5297615,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.002657641334653551,"score_gpt":0.2530825489755075,"score_spread":0.250424907640854,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}