{"id":"W4394580522","doi":"10.3897/phytokeys.241.118903","title":"Description of Navicula vanseea sp. nov. (Naviculales, Naviculaceae), a new species of diatom from the highly alkaline Lake Van (Republic of Türkiye) with complete characterisation of its organellar genomes and multigene phylogeny","year":2024,"lang":"en","type":"article","venue":"PhytoKeys","topic":"Diatoms and Algae Research","field":"Materials Science","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Generalitat de Catalunya; Natural Sciences and Engineering Research Council of Canada; Centres de Recerca de Catalunya; Rural and Environment Science and Analytical Services Division","keywords":"Navicula; Diatom; Genome; Biology; Botany; Taxonomy (biology); Phylogenetics; Zoology; Evolutionary biology; Geography; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004815997,0.0002216302,0.0005325654,0.0001244059,0.00005593782,0.00007140003,0.0003215514,0.00007427012,0.0005991982],"category_scores_gemma":[0.00004305694,0.0001489757,0.0001026983,0.0004799422,0.000292704,0.0002872412,0.0001344582,0.0001125237,0.00002525382],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002578797,"about_ca_system_score_gemma":0.0001705514,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008421498,"about_ca_topic_score_gemma":0.0004257597,"domain_scores_codex":[0.9979835,0.0001425585,0.0006143327,0.0003694162,0.0006190805,0.0002711862],"domain_scores_gemma":[0.9985945,0.0002003429,0.0003680202,0.0004049024,0.0003340761,0.00009821186],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008934156,0.0001192156,0.01484902,0.0004901659,0.00009180646,0.000006242537,0.001545398,0.00007465946,0.9812998,0.0003187187,0.0001454428,0.0009702495],"study_design_scores_gemma":[0.0006952443,0.0001784214,0.3805979,0.0004552725,0.00009892522,0.000004739943,0.0003115834,0.0008683266,0.6113198,0.000158235,0.005122352,0.0001892715],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9933189,0.004577905,0.0004669557,0.0001706268,0.0001353933,0.0004219143,0.0008212056,0.00002948045,0.00005764808],"genre_scores_gemma":[0.9975773,0.0009261772,0.0008811251,0.00002329183,0.0001549915,0.000009206572,0.0002259729,0.00003080006,0.0001710977],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.36998,"threshold_uncertainty_score":0.65608,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03249188552580418,"score_gpt":0.2475825051995777,"score_spread":0.2150906196737735,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}