{"id":"W4394622327","doi":"10.1371/journal.pbio.3002581","title":"Symbiotic revolutions at the interface of genomics and microbiology","year":2024,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Biology; Genomics; Symbiosis; Interface (matter); Data science; Computational biology; Genetics; Genome; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001463824,0.00007993769,0.0001392466,0.00002016075,0.0001388944,0.000002720465,0.0002191648,0.0001372744,0.003392955],"category_scores_gemma":[0.00003213133,0.00005375667,0.00003257201,0.00007803766,0.00126401,0.00001862174,0.0006617451,0.0001930521,0.0005309592],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006868211,"about_ca_system_score_gemma":0.000009275156,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001175275,"about_ca_topic_score_gemma":0.001023862,"domain_scores_codex":[0.9992514,0.0002448734,0.0001413861,0.000184914,0.000008042095,0.0001694224],"domain_scores_gemma":[0.9993932,0.0003320029,0.00003242722,0.000217997,0.000003621488,0.00002081044],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001432618,0.0000235648,0.00252923,0.00001222625,0.00003717592,7.45812e-7,0.000328658,0.0000156954,0.9902349,0.001043998,0.005499946,0.0002596044],"study_design_scores_gemma":[0.0005856752,0.001565408,0.021102,0.00007594739,0.0002704414,0.0008732862,0.0003448552,0.001296859,0.2761955,0.02991879,0.6670423,0.0007288776],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950805,0.001556077,0.00004743272,0.001180864,0.0001855312,0.0001132896,0.00005333433,0.00002004577,0.001762919],"genre_scores_gemma":[0.9987361,0.0002266359,0.00009467601,0.0002322809,0.00001691177,0.000004519048,0.00003248543,0.000005455419,0.0006508714],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7140393,"threshold_uncertainty_score":0.9975181,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01224774395448752,"score_gpt":0.2510656842418071,"score_spread":0.2388179402873196,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}