{"id":"W4394766992","doi":"10.3114/sim.2023.106.01","title":"In search of lost ergots: phylogenetic re-evaluation of <i>Claviceps</i> species in Japan and their biogeographic patterns revealed.","year":2023,"lang":"en","type":"article","venue":"PubMed","topic":"Plant and fungal interactions","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada","funders":"","keywords":"Biology; Claviceps purpurea; Phylogenetic tree; Taxon; Zoology; Systematics; Taxonomy (biology); Botany; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007577591,0.00006094453,0.0001250065,0.00008579021,0.00001862338,0.000009493292,0.00009155807,0.00004449715,0.00006102568],"category_scores_gemma":[0.00004862317,0.0000257527,0.00003281339,0.0007797808,0.00004389044,0.00006158164,0.00003992899,0.00006982098,0.000002892216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001113548,"about_ca_system_score_gemma":0.000003002754,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007899304,"about_ca_topic_score_gemma":0.01107803,"domain_scores_codex":[0.9992278,0.0001140186,0.000192669,0.0001354948,0.0001508,0.000179281],"domain_scores_gemma":[0.9996308,0.0002032613,0.00005081193,0.00003379149,0.00005039055,0.00003095388],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001570182,0.00006939996,0.89277,0.00001378009,0.000005967662,6.342465e-7,0.0001950413,0.000007413198,0.08242869,0.00001478565,0.0001045346,0.02437403],"study_design_scores_gemma":[0.000142415,0.00002509272,0.9920409,0.0000243525,0.000004225559,9.224854e-7,0.0009419189,0.00009307518,0.006323509,0.0001852217,0.0001689397,0.0000494101],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980755,0.0001508094,3.986055e-8,0.0006444776,0.00004906646,0.0003126714,0.0001924195,0.000006163714,0.0005688135],"genre_scores_gemma":[0.9993812,0.0003178934,8.107432e-7,0.00002660069,0.00003474307,0.00009041272,0.000046896,4.884009e-7,0.0001009432],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0992709,"threshold_uncertainty_score":0.6181802,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07054653672198243,"score_gpt":0.2546838929559182,"score_spread":0.1841373562339358,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}