{"id":"W4394805839","doi":"10.1099/ijsem.0.006328","title":"Refining the taxonomy of the order Hyphomicrobiales (Rhizobiales) based on whole genome comparisons of over 130 type strains","year":2024,"lang":"en","type":"article","venue":"INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":21,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Type genus; Taxonomy (biology); Genus; Genome; Type species; Evolutionary biology; Zoology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002579801,0.0007936331,0.0004766206,0.001689533,0.0006764699,0.001559719,0.0006722628,0.0007192899,0.0005266445],"category_scores_gemma":[0.003399504,0.0001607466,0.0007565896,0.001300033,0.0003634586,0.001146166,0.0009464821,0.001100262,0.0005114068],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005769625,"about_ca_system_score_gemma":0.001059238,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00426325,"about_ca_topic_score_gemma":0.005998485,"domain_scores_codex":[0.998966,0.0002785806,0.0001410335,0.0002656409,0.000210613,0.0001380856],"domain_scores_gemma":[0.9987172,0.0002439898,0.0002340044,0.0001716584,0.00045548,0.0001777562],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007830298,0.0002276133,0.2588716,0.0008939424,0.0003791363,0.0008431436,0.002417914,0.001694706,0.5303392,0.001828525,0.001033474,0.2006877],"study_design_scores_gemma":[0.00007763262,0.0007612693,0.9156594,0.0005921914,0.0007049126,0.00255935,0.004881511,0.01292984,0.02860183,0.002830604,0.03030596,0.0000956134],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9716128,0.003376579,0.02071635,0.0004318173,0.0001153844,0.0001517752,0.001043359,0.0001420823,0.002409878],"genre_scores_gemma":[0.9298701,0.002234068,0.06043137,0.0004084897,0.00005495265,0.00008555145,0.006330304,0.00004184215,0.0005433666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00426325,"threshold_uncertainty_score":0.0136435,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02818851830364427,"score_gpt":0.2468778041576699,"score_spread":0.2186892858540256,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}