{"id":"W4394806441","doi":"10.3390/v16040605","title":"Host Immune Response Modulation in Avian Coronavirus Infection: Tracheal Transcriptome Profiling In Vitro and In Vivo","year":2024,"lang":"en","type":"article","venue":"Viruses","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institut National de la Recherche Scientifique; Fonds de Recherche du Québec - Santé; Université de Montréal; University of Calgary","funders":"Université de Montréal; Egg Farmers of Canada; Institut national de la recherche scientifique; Natural Sciences and Engineering Research Council of Canada; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation; Canadian Poultry Research Council; McGill University","keywords":"Transcriptome; In vivo; Immune system; Biology; In vitro; Coronavirus; Virology; Immune modulation; Microbiology; Immunology; Coronavirus disease 2019 (COVID-19); Gene expression; Gene; Medicine; Genetics; Pathology; Infectious disease (medical specialty)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004599462,0.0001308898,0.0001755137,0.0001115589,0.00008855449,0.00006221367,0.000047371,0.00009369678,0.0000594969],"category_scores_gemma":[0.0000627245,0.00006607496,0.000037777,0.0007822681,0.00006800121,0.0003224616,0.00002737199,0.0002115269,0.00001337685],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001133612,"about_ca_system_score_gemma":0.000008804701,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004821952,"about_ca_topic_score_gemma":0.009378992,"domain_scores_codex":[0.9989522,0.0001617195,0.0002880935,0.000284768,0.00009720797,0.0002160549],"domain_scores_gemma":[0.9996632,0.0002427809,0.0000238289,0.00003028984,0.00001223642,0.00002763987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007528836,0.00006650826,0.1092399,0.00001299031,0.000003807088,0.00001988931,0.0002943626,0.00001991776,0.8802463,0.00004734941,0.000001696854,0.009294436],"study_design_scores_gemma":[0.0001768998,0.0001579035,0.9542111,0.00006323287,0.000003451359,0.000009120984,0.0001973773,0.0005686452,0.04309085,0.0001140153,0.001266976,0.0001404447],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9974122,0.001627444,0.000002995123,0.0002965525,0.0001384252,0.0002524036,0.00003881692,0.00008383914,0.0001473084],"genre_scores_gemma":[0.999521,0.000236323,0.00002668779,0.00006259957,0.00006004021,0.00006108778,0.000003616831,0.000001881596,0.00002680005],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8449712,"threshold_uncertainty_score":0.728938,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05265287450853166,"score_gpt":0.2924755789164014,"score_spread":0.2398227044078697,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}