{"id":"W4394933497","doi":"10.1126/science.adj3166","title":"Phage predation, disease severity, and pathogen genetic diversity in cholera patients","year":2024,"lang":"en","type":"article","venue":"Science","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":36,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University Health Centre; McGill University; McGill Genome Centre","funders":"","keywords":"Pathogen; Cholera; Genetic diversity; Biology; Predation; Diversity (politics); Disease; Virology; Genetics; Ecology; Medicine; Environmental health; Political science; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001489375,0.00005362767,0.00003753201,0.00005264224,0.0001545987,0.00007031234,0.0001647533,0.0000150735,0.000006103131],"category_scores_gemma":[0.0001014037,0.00004865824,0.00001174009,0.0001880458,0.0002721069,0.00001493036,0.0009811487,0.00003228014,0.000005550945],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002021836,"about_ca_system_score_gemma":0.00008809126,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000009909249,"about_ca_topic_score_gemma":0.00001121193,"domain_scores_codex":[0.9992678,0.00001708499,0.00005447034,0.0003135738,0.0001806586,0.000166463],"domain_scores_gemma":[0.9997213,0.00000354407,0.000007938493,0.0001271747,0.00004927581,0.0000906955],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00002771022,0.00005462337,0.7214388,0.0000574674,0.000007853976,0.00001861294,0.0004894809,0.000009139704,0.2692115,0.00001029458,0.0002320553,0.008442523],"study_design_scores_gemma":[0.0001160571,0.00003284317,0.994684,0.00001126047,0.000002834362,4.374932e-7,0.00000998192,0.0002243188,0.00261846,0.00006181921,0.002176013,0.00006197514],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987645,0.000700344,0.00004350748,0.0001401441,0.0000847305,0.0001168695,0.00004926715,0.000006574404,0.00009409418],"genre_scores_gemma":[0.9994726,0.0002051116,0.0001089699,0.00006335974,0.00002632164,0.000006220344,0.00001476678,0.000002824616,0.00009986042],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2732452,"threshold_uncertainty_score":0.1984225,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01071465646218116,"score_gpt":0.2695512319559707,"score_spread":0.2588365754937895,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}