{"id":"W4394963115","doi":"10.3390/proteomes12020014","title":"Proteomics—The State of the Field: The Definition and Analysis of Proteomes Should Be Based in Reality, Not Convenience","year":2024,"lang":"en","type":"article","venue":"Proteomes","topic":"Advanced Proteomics Techniques and Applications","field":"Chemistry","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"Brock University","funders":"","keywords":"Field (mathematics); State (computer science); Proteomics; Data science; Computer science; Biology; Mathematics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["metaresearch"],"consensus_categories":[],"category_scores_codex":[0.03060253,0.0008508475,0.002328522,0.002519353,0.003789819,0.01708224,0.003299617,0.00662819,0.002872152],"category_scores_gemma":[0.01362886,0.0006309524,0.0007159215,0.003344399,0.02323527,0.02991368,0.007337042,0.01532924,0.002804413],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.003876691,"about_ca_system_score_gemma":0.007200916,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001540213,"about_ca_topic_score_gemma":0.0008034842,"domain_scores_codex":[0.990791,0.003368942,0.0006252657,0.001881878,0.002913686,0.0004191943],"domain_scores_gemma":[0.9806389,0.01030876,0.00144384,0.00255344,0.003398763,0.001656255],"domain_codex":null,"domain_gemma":"methods","domain_candidate":"methods","domain_consensus":null,"study_design_codex":"theoretical_or_conceptual","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002625022,0.0001942895,0.003563375,0.005164362,0.0002102732,0.0003554496,0.003639476,0.0006836671,0.01173561,0.4675177,0.124855,0.3818182],"study_design_scores_gemma":[0.00001686965,0.0001683516,0.002025345,0.002995234,0.00004886257,0.0007032785,0.00216796,0.001081035,0.002718041,0.2598462,0.7280711,0.0001576998],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":"theoretical_or_conceptual","genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.004039812,0.5986783,0.0543127,0.3115443,0.01253993,0.00005470994,0.000255016,0.0004428094,0.01813242],"genre_scores_gemma":[0.1083965,0.6876879,0.0644845,0.09947886,0.0296008,0.0001906922,0.0006300496,0.0003393923,0.009191299],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.9693975,"threshold_uncertainty_score":0.1618436,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04434683044574418,"score_gpt":0.3266107133493996,"score_spread":0.2822638829036554,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}