{"id":"W4395084591","doi":"10.1002/ece3.11250","title":"Whole genomes show contrasting trends of population size changes and genomic diversity for an Amazonian endemic passerine over the late quaternary","year":2024,"lang":"en","type":"article","venue":"Ecology and Evolution","topic":"Fish biology, ecology, and behavior","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Royal Ontario Museum; The Scarborough Hospital; University of Toronto","funders":"Fundação Carlos Chagas Filho de Amparo à Pesquisa do Estado do Rio de Janeiro; Fundação Amazônia Paraense de Amparo à Pesquisa; Conselho Nacional de Desenvolvimento Científico e Tecnológico; Canadian Network for Research and Innovation in Machining Technology, Natural Sciences and Engineering Research Council of Canada","keywords":"Amazon rainforest; Amazonian; Ecology; Geography; Population; Last Glacial Maximum; Rainforest; Range (aeronautics); Ecotone; Tipping point (physics); Population size; Habitat; Biology; Demography; Holocene; Archaeology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001668501,0.0001130863,0.0001161021,0.0007183504,0.0002852706,0.0003537931,0.0001284048,0.0001888965,0.001309326],"category_scores_gemma":[0.0004964295,0.00008984985,0.0001630876,0.0005896577,0.0002331814,0.0002025332,0.0002992384,0.0002009701,0.0001193136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001548497,"about_ca_system_score_gemma":0.00008267286,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003629721,"about_ca_topic_score_gemma":0.008711109,"domain_scores_codex":[0.9999251,0.000009135814,0.000004955152,0.00003573591,0.00001026535,0.00001468453],"domain_scores_gemma":[0.9997337,0.00004639709,0.0001058946,0.00002342195,0.00004541901,0.00004512129],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0002039045,0.00003857818,0.8739216,0.00004615522,0.0002657187,0.0001199552,0.001256079,0.0004908175,0.1144454,0.0002366786,0.0002646282,0.008710446],"study_design_scores_gemma":[0.000001874074,0.00001707137,0.998549,0.000002228789,0.00001638073,0.00007609234,0.0001739258,0.0002642629,0.0004924895,0.00003344012,0.0003713967,0.000001746691],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999401,0.00004381162,0.0001009393,0.0000122823,9.612489e-7,7.85922e-7,0.0002816995,0.00000372919,0.0001547824],"genre_scores_gemma":[0.9992637,0.00002665629,0.0001337433,0.00001046554,0.000001467786,0.000001710906,0.0004527917,0.00000242867,0.0001070857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003629721,"threshold_uncertainty_score":0.007217169,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01742310577382621,"score_gpt":0.2412264768633988,"score_spread":0.2238033710895726,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}