{"id":"W4396220394","doi":"10.1128/mra.00989-23","title":"Draft genome sequences of 13 <i>Salmonella enterica</i> subsp. <i>enterica</i> isolates from chickens, cows, and Canadian <i>Salmonella</i> outbreaks","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Salmonella enterica; Outbreak; Salmonella; Biology; Genome; Microbiology; Virology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001046518,0.001839538,0.001737794,0.00555907,0.002334102,0.002204797,0.001904182,0.001057248,0.008058256],"category_scores_gemma":[0.003415099,0.001032076,0.002156949,0.01250796,0.0006513346,0.0005561111,0.001252034,0.00228254,0.004491853],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004781733,"about_ca_system_score_gemma":0.02069277,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.4493883,"about_ca_topic_score_gemma":0.5735348,"domain_scores_codex":[0.9990201,0.00003889903,0.00008219563,0.0002270098,0.0004095329,0.0002222075],"domain_scores_gemma":[0.9965208,0.000337559,0.0005001031,0.0001561008,0.001943444,0.0005420269],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.005910416,0.000536558,0.03850636,0.01096105,0.001097781,0.003319138,0.005391209,0.005728676,0.6724779,0.001949607,0.1605078,0.09361336],"study_design_scores_gemma":[0.0005739623,0.00061286,0.5330375,0.00118318,0.002083372,0.001376445,0.003128778,0.002661952,0.03830561,0.001178757,0.4154729,0.0003847159],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"dataset","genre_gemma":"empirical","genre_scores_codex":[0.0678156,0.002617157,0.004932459,0.0006294985,0.0003202794,0.0003836755,0.9171488,0.00105145,0.005101154],"genre_scores_gemma":[0.02011907,0.001187865,0.011585,0.0001675591,0.00003933135,0.000202951,0.9640923,0.000286307,0.002319626],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.5506117,"threshold_uncertainty_score":0.8935452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01095362109711656,"score_gpt":0.2038594273243367,"score_spread":0.1929058062272202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}