{"id":"W4396220394","doi":"10.1128/mra.00989-23","title":"Draft genome sequences of 13 <i>Salmonella enterica</i> subsp. <i>enterica</i> isolates from chickens, cows, and Canadian <i>Salmonella</i> outbreaks","year":2024,"lang":"en","type":"article","venue":"Microbiology Resource Announcements","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; Cegep de Saint Hyacinthe; McGill University","funders":"Fonds de recherche du Québec – Nature et technologies; Ministère de l'Agriculture, des Pêcheries et de l'Alimentation","keywords":"Salmonella enterica; Outbreak; Salmonella; Biology; Genome; Microbiology; Virology; Genetics; Gene; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0004665514,0.0005241595,0.0007897065,0.00008040678,0.0002815374,0.0001150984,0.0006677192,0.0004375604,0.0004816921],"category_scores_gemma":[0.00002891197,0.0002669827,0.0002130237,0.0004258909,0.0006162724,0.0001270514,0.0002746327,0.0003670086,0.0001881616],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009549462,"about_ca_system_score_gemma":0.0000540658,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.04830875,"about_ca_topic_score_gemma":0.01450313,"domain_scores_codex":[0.9965746,0.000371368,0.000815065,0.001123447,0.0001119089,0.00100356],"domain_scores_gemma":[0.9986991,0.0004035876,0.0002288649,0.0002201139,0.00008344584,0.0003648554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00007013264,0.00005730489,0.06336969,0.00002459784,0.0001601594,0.00005473424,0.000330409,0.000003720398,0.9293788,0.00001944896,0.004903829,0.001627196],"study_design_scores_gemma":[0.0003280648,0.0005788756,0.01034285,0.0001527206,0.000108087,0.000228099,0.0006905251,0.00004852408,0.004926031,0.0002397986,0.981696,0.0006604302],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9744199,0.01457366,0.00000611029,0.001887684,0.0003814927,0.0003410614,0.006926655,0.0001281087,0.001335332],"genre_scores_gemma":[0.9888815,0.001092799,0.00006827354,0.002866673,0.000317128,0.00002901416,0.006243662,0.000009686551,0.0004912856],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9767922,"threshold_uncertainty_score":0.9999782,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01095362109711656,"score_gpt":0.2038594273243367,"score_spread":0.1929058062272202,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}