{"id":"W4396606042","doi":"10.1126/sciadv.adl4450","title":"Structural mechanisms of Tad pilus assembly and its interaction with an RNA virus","year":2024,"lang":"en","type":"article","venue":"Science Advances","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of Allergy and Infectious Diseases; National Institute of General Medical Sciences; National Institutes of Health; Université de Montréal","keywords":"Pilus; Caulobacter crescentus; Bacteriophage; Capsid; Biology; Escherichia coli; RNA; Cell biology; Microbiology; Bacteria; Genetics; Virus; Gene; Bacterial protein","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001135366,0.00008203935,0.00007280784,0.00005376792,0.0001606485,0.0001142881,0.0001612128,0.00001469274,0.0003447444],"category_scores_gemma":[0.000009962736,0.00005796712,0.00001385941,0.0003566846,0.0002872704,0.003622238,0.00007520956,0.00007940633,0.0000343286],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005869951,"about_ca_system_score_gemma":0.00001535136,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001733233,"about_ca_topic_score_gemma":0.0004708716,"domain_scores_codex":[0.9992514,0.00001060677,0.0001012031,0.000303631,0.0001715133,0.0001616233],"domain_scores_gemma":[0.9997607,0.00001687766,0.00004547888,0.0000948231,0.00001303803,0.00006910091],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00001190345,0.000007157646,0.00001789885,0.000006860275,0.000001583545,0.000002970299,0.0002307913,0.0001898408,0.9716448,0.0004622262,0.000003147379,0.02742079],"study_design_scores_gemma":[0.00006057425,0.0003542714,0.00702474,0.00005391155,0.000009546557,0.00008488709,0.0004154866,0.003611683,0.9858714,0.001169473,0.001215068,0.0001289756],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9971649,0.0001515966,0.0007237005,0.00006736363,0.0004737829,0.00007950312,0.000009200441,0.00003154814,0.001298389],"genre_scores_gemma":[0.9977619,0.00002486917,0.001989129,0.0000374347,0.00001717509,0.00000364328,9.233942e-7,0.000005153643,0.0001597555],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02729181,"threshold_uncertainty_score":0.3774709,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0104441261761278,"score_gpt":0.2842893375535386,"score_spread":0.2738452113774109,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}