{"id":"W4396641881","doi":"10.1111/zph.13140","title":"Antimicrobial resistance, virulence potential and genomic epidemiology of global genomes of the rare <i>Salmonella enterica</i> serovar <scp>O</scp>rion","year":2024,"lang":"en","type":"article","venue":"Zoonoses and Public Health","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Conselho Nacional de Desenvolvimento Científico e Tecnológico; Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Biology; Virulence; Multilocus sequence typing; Genomic island; Salmonella enterica; Genome; Microbiology; Genetics; Plasmid; Salmonella; Antibiotic resistance; Gene; Genotype; Antibiotics; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001921009,0.000271903,0.0001867738,0.0007702102,0.0001477786,0.0003581122,0.0001149749,0.0001818766,0.0005871298],"category_scores_gemma":[0.0004273152,0.00009442839,0.0002398421,0.0007415921,0.0001869342,0.0001604855,0.000264563,0.0001406324,0.0001141136],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001765476,"about_ca_system_score_gemma":0.0002024077,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003325847,"about_ca_topic_score_gemma":0.003219005,"domain_scores_codex":[0.9998308,0.00002696351,0.00001258114,0.00007174392,0.00002347103,0.00003428975],"domain_scores_gemma":[0.9996613,0.00005793247,0.0001699861,0.00002334215,0.00005116283,0.0000363634],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006427985,0.00004506917,0.8387805,0.0003400979,0.0001336988,0.0002842789,0.0007585568,0.0005124433,0.1402973,0.00007390966,0.0001456864,0.01798578],"study_design_scores_gemma":[0.000003510654,0.0001627928,0.996235,0.00001841956,0.00004069556,0.0004324909,0.0003787829,0.0001685584,0.001894852,0.00001480887,0.0006474681,0.000002768699],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988657,0.0001913247,0.0001421101,0.00000786806,5.821948e-7,0.000003535768,0.0006119462,0.000003307515,0.000173632],"genre_scores_gemma":[0.9964516,0.0002447385,0.0006894879,0.000009528225,0.000002279519,0.000007836225,0.002462988,0.000003233713,0.0001282795],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003325847,"threshold_uncertainty_score":0.006612957,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03006438655184106,"score_gpt":0.2600283169699741,"score_spread":0.2299639304181331,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}