{"id":"W4396646579","doi":"10.1038/s41597-024-03300-5","title":"The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids","year":2024,"lang":"en","type":"article","venue":"Scientific Data","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Agriculture and Agri-Food Canada; McGill University","funders":"Agriculture and Agri-Food Canada; Government of Canada; Compute Canada; Direktoratet for Utviklingssamarbeid; Génome Québec; U.S. Department of Agriculture","keywords":"Polyploid; Genome; Biology; Introgression; Ploidy; Germplasm; Solanum tuberosum; Hybrid; Genetics; Solanum; Phylogenetic tree; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002113918,0.0004852599,0.0003995716,0.001058702,0.0005959154,0.0005475722,0.0002678917,0.0003458098,0.002299368],"category_scores_gemma":[0.0005365895,0.0002021362,0.0006837278,0.001591198,0.0001552789,0.0003070274,0.0006744135,0.0005290214,0.0007835474],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002088514,"about_ca_system_score_gemma":0.0002773334,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00198918,"about_ca_topic_score_gemma":0.005370122,"domain_scores_codex":[0.999831,0.00001193163,0.00001399429,0.00009752661,0.00002351095,0.00002207317],"domain_scores_gemma":[0.9997467,0.00006080313,0.00004429529,0.00004220117,0.00005201904,0.00005400259],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0009371433,0.00008806463,0.01814286,0.0007060246,0.0002139082,0.0007793215,0.00106914,0.0009362129,0.9543787,0.0003301741,0.001399642,0.02101886],"study_design_scores_gemma":[0.0001320707,0.0006043463,0.7330778,0.0001891197,0.0007381945,0.0034675,0.002362702,0.004233537,0.1054617,0.0007280731,0.1488831,0.0001218247],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9236348,0.0007632102,0.004387842,0.00007831372,0.00003556449,0.00005814601,0.06834657,0.0002640566,0.002431538],"genre_scores_gemma":[0.613094,0.0007359975,0.0216516,0.0001454301,0.00001599638,0.0002541472,0.3609326,0.0004784788,0.002691846],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002299368,"threshold_uncertainty_score":0.007692158,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03343120371711719,"score_gpt":0.2437696008083782,"score_spread":0.210338397091261,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}