{"id":"W4396646579","doi":"10.1038/s41597-024-03300-5","title":"The phased Solanum okadae genome and Petota pangenome analysis of 23 other potato wild relatives and hybrids","year":2024,"lang":"en","type":"article","venue":"Scientific Data","topic":"Plant Pathogens and Resistance","field":"Agricultural and Biological Sciences","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of New Brunswick; Agriculture and Agri-Food Canada; McGill University","funders":"Agriculture and Agri-Food Canada; Government of Canada; Compute Canada; Direktoratet for Utviklingssamarbeid; Génome Québec; U.S. Department of Agriculture","keywords":"Polyploid; Genome; Biology; Introgression; Ploidy; Germplasm; Solanum tuberosum; Hybrid; Genetics; Solanum; Phylogenetic tree; Gene; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0008654057,0.0000814178,0.0001331344,0.00003357447,0.0003635403,0.0004024321,0.0004134666,0.00002646311,0.00006863216],"category_scores_gemma":[0.00003210002,0.00002565724,0.00003772691,0.0008261502,0.0004298907,0.0001695418,0.0001855072,0.00005665315,0.00000791098],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000004496669,"about_ca_system_score_gemma":0.00000906942,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004887519,"about_ca_topic_score_gemma":0.0008480292,"domain_scores_codex":[0.9989616,0.00005043264,0.0001526018,0.0004825918,0.00017462,0.0001781832],"domain_scores_gemma":[0.9994394,0.000210534,0.00004550514,0.00022221,0.00002346495,0.00005884157],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001245705,0.00002346544,0.0009539655,0.00001625697,0.0002305358,0.000009956121,0.000122817,0.000001097388,0.976059,0.0005356551,0.004319747,0.01771503],"study_design_scores_gemma":[0.0000448936,0.0000314414,0.1211596,0.00002950037,0.0002422596,0.000008296928,0.000411261,0.001265949,0.0002897712,0.0003618546,0.8760126,0.000142573],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9499202,0.02698774,0.00001241198,0.00103519,0.000264498,0.00009787878,0.02102992,0.00002406986,0.000628071],"genre_scores_gemma":[0.9867976,0.000634971,0.00007225245,0.00002289945,0.0000647856,0.000002461864,0.001587881,0.000001048694,0.01081613],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9757692,"threshold_uncertainty_score":0.3880662,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03343120371711719,"score_gpt":0.2437696008083782,"score_spread":0.210338397091261,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}