{"id":"W4396654510","doi":"10.1016/j.diagmicrobio.2024.116336","title":"Evaluation of the utility and cost of secondary confirmatory testing for Neisseria gonorrhoeae identification from culture","year":2024,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Western University; Sunnybrook Health Science Centre; St. Michael's Hospital; Hamilton Regional Laboratory Medicine Program; Public Health Ontario; Kingston Health Sciences Centre; Health Sciences Centre; McMaster University Medical Centre; Trillium Health Centre; Sunnybrook Hospital; Queen's University; Brampton Civic Hospital; London Health Sciences Centre; McMaster University","funders":"","keywords":"Neisseria gonorrhoeae; Microbiology; Neisseria; Medicine; Mass spectrometry; Neisseriaceae; Identification (biology); Clinical microbiology; Biology; Chromatography; Bacteria; Chemistry; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005362598,0.00008143577,0.00009747987,0.00001896878,0.0000822532,0.00002232688,0.00005395076,0.00008965482,0.0000314999],"category_scores_gemma":[0.003980152,0.00006650875,0.00004452763,0.00004800065,0.0001928898,0.00000795888,0.00004513723,0.00005099861,6.63838e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008776859,"about_ca_system_score_gemma":0.0001660685,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003976857,"about_ca_topic_score_gemma":0.00006247991,"domain_scores_codex":[0.9992409,0.0001760545,0.0002342822,0.0002569937,0.00001887051,0.00007294266],"domain_scores_gemma":[0.9991238,0.0002854084,0.0001044339,0.0001824964,0.0002651032,0.00003882769],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002190209,0.00004446116,0.07070696,0.0001465426,0.00005007958,3.69783e-8,0.0001005239,0.000004904626,0.9191649,0.00008365518,0.0004431335,0.009232911],"study_design_scores_gemma":[0.0007473801,0.00009467196,0.913826,0.0001260375,0.000534309,0.000009882137,0.0001154873,0.002201056,0.07686324,0.00210999,0.0032101,0.000161853],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9937599,0.004249518,0.0002523814,0.0000353752,0.0003459072,0.0005600188,0.0007201558,0.00001017041,0.00006660504],"genre_scores_gemma":[0.9992594,0.00005605365,0.00002174172,0.00004637953,0.00005123505,0.00006015784,0.0004839481,0.000006133402,0.00001491577],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.843119,"threshold_uncertainty_score":0.4764901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01852290163180461,"score_gpt":0.2749273677696044,"score_spread":0.2564044661377998,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}