{"id":"W4396654510","doi":"10.1016/j.diagmicrobio.2024.116336","title":"Evaluation of the utility and cost of secondary confirmatory testing for Neisseria gonorrhoeae identification from culture","year":2024,"lang":"en","type":"article","venue":"Diagnostic Microbiology and Infectious Disease","topic":"Bacterial Identification and Susceptibility Testing","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Western University; Sunnybrook Health Science Centre; St. Michael's Hospital; Hamilton Regional Laboratory Medicine Program; Public Health Ontario; Kingston Health Sciences Centre; Health Sciences Centre; McMaster University Medical Centre; Trillium Health Centre; Sunnybrook Hospital; Queen's University; Brampton Civic Hospital; London Health Sciences Centre; McMaster University","funders":"","keywords":"Neisseria gonorrhoeae; Microbiology; Neisseria; Medicine; Mass spectrometry; Neisseriaceae; Identification (biology); Clinical microbiology; Biology; Chromatography; Bacteria; Chemistry; Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.005744906,0.0006276186,0.0007274495,0.001716995,0.0002815269,0.001253264,0.001100273,0.0006376468,0.001688611],"category_scores_gemma":[0.02880244,0.0001712476,0.0007663245,0.001620602,0.0003897946,0.000552898,0.0005713165,0.0004138241,0.0003457344],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002444136,"about_ca_system_score_gemma":0.001324682,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007026978,"about_ca_topic_score_gemma":0.007480829,"domain_scores_codex":[0.9893107,0.00398562,0.0006056068,0.0004929818,0.005218528,0.0003865298],"domain_scores_gemma":[0.9637428,0.02122675,0.002869243,0.0008946268,0.01053375,0.0007329317],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.01709643,0.002400477,0.5813033,0.002076657,0.0006576229,0.001358805,0.0005770884,0.004465162,0.03395256,0.0007621854,0.002189954,0.3531598],"study_design_scores_gemma":[0.0002666704,0.02753441,0.877014,0.0004633487,0.001291573,0.004276785,0.001000058,0.02763829,0.05321636,0.0004439837,0.006747608,0.0001067835],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9867344,0.002985179,0.003727904,0.000422607,0.00004679588,0.0003915482,0.001335057,0.00005408157,0.004302435],"genre_scores_gemma":[0.9901484,0.0008937275,0.007183298,0.00008548547,0.00002716703,0.0001449458,0.0008062033,0.00001660451,0.0006941696],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007026978,"threshold_uncertainty_score":0.03038234,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01852290163180461,"score_gpt":0.2749273677696044,"score_spread":0.2564044661377998,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}