{"id":"W4396696421","doi":"10.1038/s41564-024-01656-3","title":"MicrobioRaman: an open-access web repository for microbiological Raman spectroscopy data","year":2024,"lang":"en","type":"letter","venue":"Nature Microbiology","topic":"Spectroscopy Techniques in Biomedical and Chemical Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":34,"is_retracted":false,"has_abstract":false,"ca_institutions":"York University","funders":"European Molecular Biology Laboratory; Gordon and Betty Moore Foundation; Simons Foundation","keywords":"Raman spectroscopy; World Wide Web; Spectroscopy; Open source; Computer science; Chemistry; Physics; Optics; Astronomy","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":["open_science"],"consensus_categories":[],"category_scores_codex":[0.005935279,0.0009208645,0.00125706,0.003582244,0.001183154,0.004633629,0.005573235,0.005098096,0.2141331],"category_scores_gemma":[0.02441505,0.000979411,0.000766019,0.002665399,0.0008415538,0.004424951,0.005405428,0.005055758,0.1645223],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009780211,"about_ca_system_score_gemma":0.002505949,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008111869,"about_ca_topic_score_gemma":0.002262397,"domain_scores_codex":[0.9968798,0.0004612902,0.0002311426,0.0002273457,0.001908815,0.0002916068],"domain_scores_gemma":[0.9824901,0.006413171,0.001346013,0.003761289,0.00291802,0.003071418],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0001392134,0.00002897301,0.0001770091,0.0002051713,0.00001646974,0.0001230846,0.00002842203,0.00004984464,0.002211045,0.002267118,0.9626133,0.03214021],"study_design_scores_gemma":[0.00005455593,0.00002254812,0.0003991559,0.0001369313,0.000009933259,0.0001955097,0.00002800775,0.0007188225,0.002805018,0.005733012,0.9898599,0.00003656799],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.004564936,0.009889339,0.1110225,0.09645844,0.0322746,0.001424951,0.231453,0.260451,0.2524613],"genre_scores_gemma":[0.0522446,0.009948926,0.1768804,0.07261965,0.02861937,0.002833819,0.2515959,0.06048331,0.3447742],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.9944268,"threshold_uncertainty_score":0.7163465,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04313059858605189,"score_gpt":0.4300826229120868,"score_spread":0.3869520243260349,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}