{"id":"W4396796891","doi":"10.1101/2024.05.08.593017","title":"Phylogenomics of novel clones of <i>Aeromonas veronii</i> recovered from a freshwater lake reveals unique biosynthetic gene clusters","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Aquaculture disease management and microbiota","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"","keywords":"Aeromonas veronii; Biology; Phylogenomics; Virulence; Gene; Aeromonas; Human pathogen; Microbiology; Genetics; Whole genome sequencing; Genome; Plasmid; Bacteria; Phylogenetics; Clade","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009946268,0.0002473175,0.0002406495,0.0007253434,0.0004945073,0.0007653926,0.000145035,0.0002547789,0.0007284422],"category_scores_gemma":[0.000306423,0.0001274364,0.0003464839,0.001105653,0.0002502123,0.0001602024,0.0003811162,0.0002430757,0.0002470032],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004711908,"about_ca_system_score_gemma":0.0005361118,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.03338279,"about_ca_topic_score_gemma":0.03738249,"domain_scores_codex":[0.9997832,0.00001123805,0.00001411418,0.00007102611,0.00006138456,0.00005904219],"domain_scores_gemma":[0.9997281,0.0000359109,0.00008235152,0.00002246728,0.00007421699,0.00005686752],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.000236913,0.00002974445,0.1556788,0.0001082993,0.00004070333,0.0004055332,0.0009367972,0.0002483047,0.8338555,0.00006311654,0.0001691962,0.00822717],"study_design_scores_gemma":[0.000003784851,0.00009082135,0.9767137,0.0000125172,0.00003288058,0.0005184499,0.000837954,0.0005678806,0.01859622,0.00002247274,0.00259473,0.000008716493],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973155,0.0001054746,0.0004242167,0.00002811357,0.000002759406,0.00001640547,0.001469684,0.00001299008,0.0006248457],"genre_scores_gemma":[0.993489,0.0001471879,0.001144338,0.00004025013,0.000004239052,0.00001730744,0.003980248,0.00001282339,0.001164519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03338279,"threshold_uncertainty_score":0.06637698,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01180901992070488,"score_gpt":0.201735327727129,"score_spread":0.1899263078064241,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}