{"id":"W4396803988","doi":"10.3855/jidc.20136","title":"Complete Genome Sequencing, Annotation, and Mutational Profiling of the Novel Clade I Human Mpox Virus, Kamituga Strain","year":2024,"lang":"en","type":"article","venue":"The Journal of Infection in Developing Countries","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":44,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; Dalhousie University","funders":"Canadian Institutes of Health Research","keywords":"Biology; Frameshift mutation; Genetics; Genome; Whole genome sequencing; Clade; Phylogenetic tree; Reference genome; Nonsynonymous substitution; Indel; Gene; Virology; Single-nucleotide polymorphism; Mutation; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002016357,0.0003821511,0.0002628421,0.0007326273,0.0004530739,0.0006754771,0.0002121022,0.0003384466,0.000895555],"category_scores_gemma":[0.0007256371,0.0001459445,0.0003707704,0.001009245,0.0002233418,0.0001820587,0.0003117203,0.0003004654,0.0003527233],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003821549,"about_ca_system_score_gemma":0.0004271464,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007904075,"about_ca_topic_score_gemma":0.01059535,"domain_scores_codex":[0.999811,0.00002586577,0.00002039127,0.00006879264,0.00004030066,0.00003365804],"domain_scores_gemma":[0.999643,0.00006443638,0.0001198614,0.00004781929,0.0000751831,0.00004968622],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.001216212,0.0001017953,0.206872,0.0006814952,0.00019119,0.003114552,0.002360245,0.001163173,0.7554088,0.0002507712,0.001933161,0.0267067],"study_design_scores_gemma":[0.00004509363,0.0004404974,0.9246925,0.0001845569,0.0003179219,0.005378632,0.001724772,0.001739119,0.03945905,0.0001391032,0.02583632,0.00004248344],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9762739,0.0009871462,0.00143292,0.00008606404,0.00001356624,0.00007844654,0.0203545,0.00004496779,0.0007284126],"genre_scores_gemma":[0.934519,0.001105199,0.008384258,0.0001390558,0.00002745244,0.0001347577,0.05458788,0.00007152915,0.001030828],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.007904075,"threshold_uncertainty_score":0.01571614,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03331538751670926,"score_gpt":0.2993479823194783,"score_spread":0.2660325948027691,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}