{"id":"W4396809321","doi":"10.1101/2024.05.09.593269","title":"Endogenous retrovirus ERV-DC8 highly integrated in domestic cat populations is a replication-competent provirus","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Western University","funders":"","keywords":"Provirus; Retrovirus; Replication (statistics); Endogeny; Endogenous retrovirus; Virology; Biology; Business; Virus; Gene; Genetics; Endocrinology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001574166,0.0001808925,0.0001339228,0.0005207242,0.0001830342,0.0003344023,0.0001725839,0.0002608825,0.001509319],"category_scores_gemma":[0.0001375822,0.0001066112,0.000169904,0.0002309515,0.0002343297,0.0001377987,0.0002269492,0.0004071908,0.0003594514],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003924589,"about_ca_system_score_gemma":0.000137332,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0007422016,"about_ca_topic_score_gemma":0.0008394779,"domain_scores_codex":[0.9998486,0.00002002766,0.00001471921,0.00005329967,0.00003795789,0.00002549084],"domain_scores_gemma":[0.9998876,0.00002421154,0.00003463188,0.00001936238,0.0000158578,0.00001828535],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00005270613,0.00001999883,0.002970993,0.00002018265,0.000007370277,0.0001688842,0.00004083311,0.00003914259,0.9945911,0.0003046666,0.00003044715,0.001753697],"study_design_scores_gemma":[0.00004426799,0.0004150784,0.06065207,0.00002776626,0.00005185037,0.005679171,0.0002767433,0.002563488,0.9186068,0.0003676447,0.01130169,0.00001354016],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9966729,0.0001957343,0.001877911,0.00002207729,0.000006377491,0.00001615776,0.0003310306,0.00003302841,0.0008447329],"genre_scores_gemma":[0.9939765,0.0001286685,0.002308245,0.0000190703,0.000003008486,0.00001654041,0.001119006,0.00001845082,0.002410584],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001509319,"threshold_uncertainty_score":0.005049169,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03567482357488552,"score_gpt":0.2343122388451519,"score_spread":0.1986374152702663,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}