{"id":"W4396829621","doi":"10.1101/2024.05.07.592900","title":"Embryo spatial 3D genomics","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Institute of Genetics","funders":"","keywords":"Genomics; Computational biology; Embryo; Biology; Evolutionary biology; Computer science; Genetics; Genome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002092878,0.0003232987,0.0002420479,0.0004101043,0.0002373488,0.0005199247,0.0003487392,0.0004428698,0.00669521],"category_scores_gemma":[0.0001610911,0.0003636251,0.0004245559,0.0002306265,0.0003492761,0.0002322141,0.0005651596,0.0007325959,0.002490481],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004123702,"about_ca_system_score_gemma":0.000346063,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001395867,"about_ca_topic_score_gemma":0.003004953,"domain_scores_codex":[0.9998672,0.00001251771,0.000005517229,0.00003687043,0.00006507884,0.0000128863],"domain_scores_gemma":[0.9998862,0.00003263525,0.00001142284,0.00003561336,0.00002476043,0.00000938062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003419091,0.000007936927,0.0005090255,0.0001080781,0.00001387519,0.000186896,0.00007758827,0.005088591,0.957574,0.01543573,0.003156175,0.01780771],"study_design_scores_gemma":[0.00002455899,0.00006517828,0.006455835,0.00003731226,0.00003363586,0.0007750272,0.00007407527,0.03983047,0.7530001,0.00592065,0.1937231,0.00005994783],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.07077184,0.001419497,0.8782896,0.0007156337,0.0004094899,0.0001628591,0.01058203,0.005570319,0.03207873],"genre_scores_gemma":[0.3895015,0.00191874,0.5627798,0.000481965,0.00009126084,0.0004208218,0.007804821,0.001636149,0.03536495],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.00669521,"threshold_uncertainty_score":0.0223977,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01080292596374345,"score_gpt":0.2075731333902248,"score_spread":0.1967702074264813,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}