{"id":"W4396866914","doi":"10.1101/2024.05.09.593432","title":"Centromeres are Hotspots for Chromosomal Inversions and Breeding Traits in Mango","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Phytoplasmas and Hemiptera pathogens","field":"Agricultural and Biological Sciences","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Centromere; Biology; Evolutionary biology; Geography; Genetics; Chromosome; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002251005,0.0003709419,0.0004381087,0.00007358858,0.0001630225,0.0002220922,0.0002961868,0.0003954876,0.00004263311],"category_scores_gemma":[0.00006460793,0.0001985979,0.0001481562,0.000355127,0.00006662073,0.00007907311,0.0005072781,0.0004652414,0.00001496484],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001001235,"about_ca_system_score_gemma":0.00004695728,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002706974,"about_ca_topic_score_gemma":0.0001172259,"domain_scores_codex":[0.9981173,0.000036057,0.0003128946,0.0008405827,0.000180901,0.0005122602],"domain_scores_gemma":[0.9993044,0.0001049283,0.0001569415,0.0001114757,0.000100354,0.0002219544],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00002087338,0.00006598631,0.0331265,0.0002625587,0.00003684319,0.00005067862,0.00001334735,0.000003072568,0.9654149,0.00041865,0.0005494484,0.00003710996],"study_design_scores_gemma":[0.0003143131,0.0001011789,0.9457695,0.0009895297,0.00007133245,5.522727e-8,0.00002462403,0.0003708811,0.04523302,0.00003743032,0.00640334,0.0006847301],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950678,0.001381204,0.000001246727,0.0009264704,0.0004941616,0.0006133858,0.001342798,0.0001632608,0.000009683631],"genre_scores_gemma":[0.9983519,0.0002372901,0.0003964166,0.0001447322,0.0006877136,0.0001657202,9.266911e-7,0.000008881446,0.000006471258],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9201819,"threshold_uncertainty_score":0.8098589,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01998411198744966,"score_gpt":0.2045701444192458,"score_spread":0.1845860324317962,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}