{"id":"W4396893073","doi":"10.1128/mbio.00933-24","title":"Key aspects of papillomavirus infection influence the host cervicovaginal microbiome in a preclinical murine papillomavirus (MmuPV1) infection model","year":2024,"lang":"en","type":"article","venue":"mBio","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"National Institute of General Medical Sciences; National Cancer Institute; National Institutes of Health; Mary Kay Foundation","keywords":"Microbiome; HPV infection; Biology; Papillomaviridae; Disease; Oral Microbiome; Immunology; Dysplasia; Virology; Cervical cancer; Cancer; Medicine; Genetics; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0007077805,0.0002104493,0.0003801199,0.0003359906,0.00007769863,0.00006684474,0.0001359511,0.0001949766,0.0006786796],"category_scores_gemma":[0.0001893763,0.0001509838,0.0001875391,0.001110057,0.0002370162,0.0001946663,0.000158141,0.000665097,0.0001671881],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002748532,"about_ca_system_score_gemma":0.0003563983,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005027578,"about_ca_topic_score_gemma":0.001955784,"domain_scores_codex":[0.9980671,0.0001124886,0.0005479015,0.0004529289,0.0004255227,0.0003940464],"domain_scores_gemma":[0.9989852,0.0001788557,0.00006039118,0.0004458465,0.0001925387,0.000137192],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003390462,0.002053799,0.5186924,0.005168656,0.0004889917,0.0003520168,0.002554024,0.002029138,0.3281213,0.007692304,0.001284849,0.1281721],"study_design_scores_gemma":[0.001669578,0.0006817385,0.9623533,0.000353025,0.00009095298,0.00008568009,0.00001049963,0.006449602,0.01849687,0.00191802,0.007686085,0.0002046757],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9840027,0.001506944,0.0001611739,0.001232232,0.0001987653,0.0006365835,0.00002351138,0.0001251516,0.01211294],"genre_scores_gemma":[0.9978873,0.0009599164,0.00005390903,0.0003884902,0.0002071356,0.0000792585,0.00001866005,0.00003376749,0.0003715628],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4436609,"threshold_uncertainty_score":0.7600227,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0467877295997035,"score_gpt":0.3794736908515135,"score_spread":0.33268596125181,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}