{"id":"W4396951121","doi":"10.1099/mic.0.001456","title":"Characterization of MLST-99 Salmonella Typhimurium and the monophasic variant I:4,[5],12:i:- isolated from Canadian Atlantic coast shellfish","year":2024,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Shellfish; Salmonella; Multilocus sequence typing; Biology; Microbiology; Enterobacteriaceae; Zoology; Fishery; Bacteria; Genetics; Escherichia coli; Gene; Fish <Actinopterygii>; Aquatic animal; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003217701,0.0001767478,0.0003689638,0.00002989257,0.0001180666,0.00004179203,0.0002344824,0.000255142,0.0004689311],"category_scores_gemma":[0.0000351153,0.00006420602,0.00008658212,0.0001972771,0.0002874479,0.0000465288,0.00007155981,0.0001698017,0.00006393821],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002490342,"about_ca_system_score_gemma":0.0000297619,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.09343995,"about_ca_topic_score_gemma":0.1249737,"domain_scores_codex":[0.9985638,0.0003335065,0.0003420298,0.0003888886,0.00002671535,0.0003450601],"domain_scores_gemma":[0.9991711,0.000519408,0.00008612166,0.00008739648,0.0000384313,0.0000975919],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009401887,0.00001303211,0.009746266,0.000008473226,0.00006738268,0.00002230275,0.0001994022,3.973046e-7,0.9854938,0.0003380046,0.0008009765,0.003215967],"study_design_scores_gemma":[0.001843725,0.0008990445,0.7349854,0.0002495624,0.000404675,0.001037051,0.0004419899,0.002462799,0.02128858,0.004699452,0.2304816,0.001206154],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9944408,0.0009813828,0.00001937752,0.003179041,0.0005328248,0.000223064,0.0004310278,0.00004574509,0.0001467347],"genre_scores_gemma":[0.9971188,0.0003906668,0.000009842529,0.0008423266,0.0002372058,0.000008923349,0.001246897,0.000002475541,0.000142826],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9642052,"threshold_uncertainty_score":0.9125969,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009161982679654792,"score_gpt":0.1850922868944519,"score_spread":0.1759303042147971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}