{"id":"W4396951121","doi":"10.1099/mic.0.001456","title":"Characterization of MLST-99 Salmonella Typhimurium and the monophasic variant I:4,[5],12:i:- isolated from Canadian Atlantic coast shellfish","year":2024,"lang":"en","type":"article","venue":"Microbiology","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canadian Food Inspection Agency","funders":"Canadian Food Inspection Agency","keywords":"Shellfish; Salmonella; Multilocus sequence typing; Biology; Microbiology; Enterobacteriaceae; Zoology; Fishery; Bacteria; Genetics; Escherichia coli; Gene; Fish <Actinopterygii>; Aquatic animal; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00017848,0.0003784973,0.0002469615,0.00101938,0.0004350676,0.0005360017,0.0003702768,0.0003390968,0.0004480334],"category_scores_gemma":[0.0006022178,0.0002025237,0.000390549,0.001378403,0.0003343226,0.0001433201,0.0002371477,0.0003084342,0.0002011503],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001360913,"about_ca_system_score_gemma":0.002062041,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.3635702,"about_ca_topic_score_gemma":0.4110153,"domain_scores_codex":[0.9996359,0.0000124829,0.00003283967,0.00007034872,0.0001637792,0.00008455697],"domain_scores_gemma":[0.9995362,0.00003820741,0.0001060251,0.00002455275,0.000204583,0.00009042861],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003603033,0.0001168527,0.1515713,0.000149644,0.00003700087,0.0004624041,0.0007746349,0.0004232266,0.8413409,0.00008548443,0.0001380596,0.00454018],"study_design_scores_gemma":[0.00001142626,0.0003900333,0.9522132,0.00001792786,0.00005392187,0.0005653236,0.0009525169,0.0006475579,0.04330203,0.00001620049,0.001812177,0.00001762018],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9977146,0.0001469798,0.0002552829,0.00003152607,0.000003976213,0.00003042274,0.001338703,0.00000584627,0.0004726557],"genre_scores_gemma":[0.9923354,0.0002459604,0.001433451,0.0000660055,0.000005097463,0.00002087376,0.00474069,0.000009246137,0.001143379],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6364298,"threshold_uncertainty_score":0.722908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009161982679654792,"score_gpt":0.1850922868944519,"score_spread":0.1759303042147971,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}