{"id":"W4396996809","doi":"10.1101/2024.05.14.594262","title":"Synovial Sarcoma Chromatin Dynamics Reveal a Continuum in SS18:SSX Reprograming","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Sarcoma Diagnosis and Treatment","field":"Medicine","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto; Lunenfeld-Tanenbaum Research Institute; Mount Sinai Hospital; Sinai Health System; University of British Columbia Hospital; Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"","keywords":"Synovial sarcoma; Chromatin; Physics; Sarcoma; Medicine; Biology; Pathology; DNA; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009703589,0.0001065358,0.000134677,0.0003573074,0.0000865887,0.0002426723,0.00007178246,0.0001127404,0.00166563],"category_scores_gemma":[0.000149607,0.0001212778,0.0001146954,0.000280989,0.0001657405,0.0001412919,0.0002722956,0.0001330537,0.0003213679],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001122438,"about_ca_system_score_gemma":0.00007186746,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003688157,"about_ca_topic_score_gemma":0.0006230955,"domain_scores_codex":[0.9999403,0.000005789934,0.000004278048,0.00002170427,0.00001734698,0.00001050587],"domain_scores_gemma":[0.9999293,0.00001239334,0.00002421786,0.00001123382,0.000009249494,0.00001359056],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002249526,0.00000803247,0.02364378,0.00003695543,0.00002066308,0.0001333853,0.0001104641,0.0002266907,0.9687279,0.0001585389,0.00009202043,0.006616653],"study_design_scores_gemma":[0.0000176066,0.0002239387,0.6373799,0.00001246842,0.00004118571,0.001582647,0.0002773178,0.002024455,0.3534568,0.0009475631,0.004019856,0.00001617788],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.994653,0.000800653,0.002909445,0.00003650089,0.000003297227,0.000006942719,0.0007082398,0.00006073896,0.0008211902],"genre_scores_gemma":[0.9975433,0.000264297,0.0007682283,0.00002194972,0.000002419022,0.000007233638,0.0006143956,0.00001098271,0.0007671915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.00166563,"threshold_uncertainty_score":0.005572081,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01338060821544489,"score_gpt":0.2494501984554225,"score_spread":0.2360695902399776,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}