{"id":"W4397009006","doi":"10.17504/protocols.io.kxygxy9mwl8j/v1","title":"HiDEF-seq v1","year":2024,"lang":"en","type":"preprint","venue":"","topic":"Single-cell and spatial transcriptomics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Hospital for Sick Children","funders":"","keywords":"Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002540491,0.004012947,0.00321645,0.002954861,0.001763693,0.002740677,0.005180651,0.002692801,0.1686055],"category_scores_gemma":[0.003701037,0.003707845,0.002658537,0.001789523,0.0008749657,0.001627888,0.003244105,0.004289556,0.2163277],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.001047235,"about_ca_system_score_gemma":0.00175425,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002194535,"about_ca_topic_score_gemma":0.004531885,"domain_scores_codex":[0.9977059,0.0002756483,0.0001943094,0.0007791949,0.0006182967,0.0004265849],"domain_scores_gemma":[0.9984642,0.000470824,0.00008523896,0.0006154536,0.0002051511,0.0001590879],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001560313,0.0002403341,0.001364055,0.00390369,0.0005127738,0.0004810604,0.0003908467,0.0019556,0.356503,0.006468298,0.5480171,0.07860277],"study_design_scores_gemma":[0.0003724874,0.0002240692,0.002614875,0.0002936377,0.0001957108,0.001025872,0.00006940002,0.005643544,0.202167,0.005919501,0.7811508,0.0003229876],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"dataset","genre_gemma":"software","genre_scores_codex":[0.005846188,0.002091331,0.3128635,0.0005220576,0.00101219,0.001838195,0.4025331,0.2504093,0.02288401],"genre_scores_gemma":[0.01448658,0.001140597,0.2244637,0.001488014,0.0002538613,0.008117169,0.5984293,0.1076323,0.04398839],"genre_candidate":"software","genre_consensus":null,"teacher_disagreement_score":0.1686055,"threshold_uncertainty_score":0.5640416,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01707914603782543,"score_gpt":0.2512900597381824,"score_spread":0.234210913700357,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}