{"id":"W4398167864","doi":"10.1128/spectrum.03470-23","title":"Functional genomic analysis of the isolated potential probiotic <i>Lactobacillus delbrueckii</i> subsp. <i>indicus</i> TY-11 and its comparison with other <i>Lactobacillus delbrueckii</i> strains","year":2024,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Probiotics and Fermented Foods","field":"Agricultural and Biological Sciences","cited_by":10,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; National Health and Medical Research Council","keywords":"Lactobacillus; Probiotic; Biology; Microbiology; Lactobacillus delbrueckii subsp. bulgaricus; Lactobacillaceae; Bacteria; Genetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002366602,0.0004002933,0.0006292297,0.0001624441,0.0004009691,0.0002057584,0.0004158131,0.0003390629,0.000498538],"category_scores_gemma":[0.000008247914,0.0001632945,0.0003359656,0.00167394,0.0004834919,0.00009937918,0.0002121876,0.0004268893,0.0000373848],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001205634,"about_ca_system_score_gemma":0.00007289131,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008285296,"about_ca_topic_score_gemma":0.02344823,"domain_scores_codex":[0.9977311,0.0001613384,0.0005533289,0.0007737534,0.0001397394,0.000640757],"domain_scores_gemma":[0.9993122,0.00009695697,0.0002257805,0.0001744369,0.00007155299,0.000119097],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001545827,0.0001835221,0.007127356,0.00002445731,0.001208954,0.000009779527,0.0001168972,0.0003924142,0.9888066,0.0008174094,0.000552631,0.0006053713],"study_design_scores_gemma":[0.004012763,0.004591169,0.6762629,0.0005167059,0.01069333,0.001459811,0.001112906,0.01954633,0.177073,0.0008461742,0.09958614,0.004298764],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932979,0.001696196,0.0001393586,0.002081233,0.0003762217,0.0004609181,0.00165094,0.0001163015,0.0001809512],"genre_scores_gemma":[0.9985934,0.0000786345,0.00003577703,0.0004599052,0.0001326356,0.000007850665,0.0004280211,0.000008165008,0.000255589],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8117337,"threshold_uncertainty_score":0.9943713,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0113008304849121,"score_gpt":0.1949415889743063,"score_spread":0.1836407584893942,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}