{"id":"W4398223076","doi":"10.3390/microorganisms12061048","title":"Latent Tuberculosis Infection Is Associated with an Enrichment of Short-Chain Fatty Acid-Producing Bacteria in the Stool of Women Living with HIV","year":2024,"lang":"en","type":"article","venue":"Microorganisms","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University; McGill University Health Centre","funders":"European and Developing Countries Clinical Trials Partnership; National Institute of Biomedical Imaging and Bioengineering; National Institute of Allergy and Infectious Diseases; National Research Foundation; University of Cape Town; South African Medical Research Council; Deutscher Akademischer Austauschdienst; Fogarty International Center; Harry Crossley Foundation","keywords":"Human immunodeficiency virus (HIV); Bacteria; Tuberculosis; Acid-fast; Latent tuberculosis; Fatty acid; Microbiology; Medicine; Immunology; Virology; Biology; Mycobacterium tuberculosis; Biochemistry; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005872367,0.0001528858,0.0001973523,0.00005811903,0.00004776205,0.00002982471,0.0001121382,0.0001069375,0.00003715108],"category_scores_gemma":[0.00001732156,0.0001025391,0.00003354833,0.0002429223,0.00005109967,0.000008793542,0.00004767979,0.0001193132,0.000001564694],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001230567,"about_ca_system_score_gemma":0.000123422,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001663025,"about_ca_topic_score_gemma":0.0003778366,"domain_scores_codex":[0.9989284,0.0001170801,0.0002366908,0.0003364549,0.0001034514,0.0002779497],"domain_scores_gemma":[0.9995231,0.00001363997,0.00006827515,0.0002867676,0.0000657374,0.00004245789],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003207795,0.0001567767,0.05097391,0.0001041597,0.0001012348,0.000002750698,0.005714231,0.00001482103,0.9425598,0.000005433759,0.00007595829,0.0002587924],"study_design_scores_gemma":[0.0001787795,0.0008512322,0.2848296,0.000182971,0.0000316412,0.00001972991,0.0004677713,0.00001144315,0.7131802,0.000004018648,0.000114286,0.0001283742],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9989988,0.0002138291,0.0002987306,0.0001337652,0.00004265326,0.0002452467,0.00003436265,0.00001216314,0.00002040607],"genre_scores_gemma":[0.9992613,0.00008764894,0.0003017265,0.0001485969,0.00003604696,0.00001702485,0.00008154427,0.00002727915,0.00003890177],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2338557,"threshold_uncertainty_score":0.4181423,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007865241577859493,"score_gpt":0.23160697661057,"score_spread":0.2237417350327105,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}