{"id":"W4399154537","doi":"10.17504/protocols.io.14egn63oql5d/v1","title":"DNA Extraction from 0.22µm Sterivex Filters - Phenol-Chloroform v1","year":2024,"lang":"en","type":"preprint","venue":"","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Tula Foundation","funders":"","keywords":"Amplicon; Shotgun sequencing; DNA extraction; DNA sequencing; genomic DNA; Biology; Computational biology; DNA; Shotgun; Extraction (chemistry); Chromatography; Genetics; Polymerase chain reaction; Chemistry; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002856373,0.003641067,0.002767368,0.00476126,0.002329761,0.001334054,0.00376506,0.001475834,0.04319956],"category_scores_gemma":[0.003236652,0.00155239,0.002051822,0.003225897,0.001521102,0.000893784,0.0016926,0.003075586,0.07497809],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005156875,"about_ca_system_score_gemma":0.001895376,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003207058,"about_ca_topic_score_gemma":0.007589862,"domain_scores_codex":[0.9967962,0.0004749247,0.000366113,0.0009749703,0.0008875632,0.0005003064],"domain_scores_gemma":[0.9980808,0.000494711,0.0001658194,0.0004993714,0.0005736534,0.0001856112],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000238991,0.0004092813,0.002446276,0.002108367,0.0001233373,0.0007014177,0.0005272974,0.0003579189,0.9074572,0.001282339,0.02430138,0.06004626],"study_design_scores_gemma":[0.000162707,0.001712525,0.02106999,0.0007977626,0.0004436444,0.001948016,0.0004862387,0.00198567,0.4681445,0.002135983,0.500886,0.0002269323],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.08162709,0.006348343,0.7317725,0.0009037608,0.002150063,0.02453743,0.07081938,0.02401602,0.05782535],"genre_scores_gemma":[0.04792144,0.007888803,0.5454174,0.001731571,0.0007569435,0.01922841,0.253784,0.004869253,0.1184023],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.04319956,"threshold_uncertainty_score":0.1445169,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01862845831084284,"score_gpt":0.2594624827440149,"score_spread":0.2408340244331721,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}