{"id":"W4399172521","doi":"10.3390/agronomy14061183","title":"Genome-Wide Association Study and Candidate Gene Mining of Seed Size Traits in Soybean","year":2024,"lang":"en","type":"article","venue":"Agronomy","topic":"Soybean genetics and cultivation","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Science Basic Research Program of Shaanxi Province; National Natural Science Foundation of China","keywords":"Biology; Candidate gene; Genome-wide association study; Quantitative trait locus; Locus (genetics); Genetic architecture; Genetics; Gene; Single-nucleotide polymorphism; Linkage disequilibrium; Genetic association; Genome; Allele; Genotype","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002145941,0.00005900783,0.00009072659,0.0000097597,0.00003311341,0.00004072815,0.00004728695,0.0000334185,0.00004284605],"category_scores_gemma":[0.00004251279,0.00002644109,0.00002022917,0.0001744157,0.000007670606,0.00005033512,0.00002162022,0.00003644824,0.000002675642],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003155439,"about_ca_system_score_gemma":0.000007428656,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002157431,"about_ca_topic_score_gemma":0.0005209831,"domain_scores_codex":[0.9994824,0.00003463145,0.0001467694,0.0001546371,0.00008103652,0.0001005569],"domain_scores_gemma":[0.9996341,0.0002657891,0.00004177029,0.0000152076,0.00001847751,0.0000245902],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000004389189,0.00004374137,0.9221927,0.000004150243,0.00002082708,0.000001768369,0.001620312,0.000003591955,0.06710243,0.000005838771,0.00004428752,0.00895599],"study_design_scores_gemma":[0.0001095355,0.00009102134,0.9964941,0.000009321637,0.000007337945,1.297241e-7,0.001630977,0.0000337284,0.0008446213,0.00006970633,0.0006464323,0.00006309009],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9987343,0.0002964137,0.000001078826,0.000313527,0.00002856973,0.0001746702,0.000007563002,0.00001390177,0.0004299518],"genre_scores_gemma":[0.9996014,0.00000944125,0.00005201726,0.00003228549,0.00005264334,0.0000107793,0.00001435708,6.413119e-7,0.0002264336],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.07430143,"threshold_uncertainty_score":0.1078236,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01216293244621438,"score_gpt":0.2103618345545883,"score_spread":0.198198902108374,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}