{"id":"W4399288972","doi":"10.3390/app14114837","title":"Whole-Genome Alignment: Methods, Challenges, and Future Directions","year":2024,"lang":"en","type":"article","venue":"Applied Sciences","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":12,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"National Natural Science Foundation of China","keywords":"Computational biology; Computer science; Biology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.06149997,0.002170841,0.002993572,0.004002762,0.001864962,0.008340104,0.005695604,0.006654455,0.006023139],"category_scores_gemma":[0.04715775,0.001374283,0.001450658,0.005914634,0.008306617,0.02031495,0.005276564,0.006994821,0.004760723],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002791308,"about_ca_system_score_gemma":0.006767655,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003962731,"about_ca_topic_score_gemma":0.004857687,"domain_scores_codex":[0.9854016,0.008328166,0.0008966999,0.001723827,0.003103579,0.0005460759],"domain_scores_gemma":[0.9322702,0.05068227,0.002112147,0.003855981,0.008468354,0.002611103],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"theoretical_or_conceptual","study_design_scores_codex":[0.0002875827,0.0002384423,0.004469546,0.008211642,0.0002014024,0.0003425221,0.0009117547,0.005861752,0.003428757,0.1147899,0.04589607,0.8153607],"study_design_scores_gemma":[0.00006386975,0.0003781892,0.004405158,0.007934776,0.0001639813,0.001425456,0.003056099,0.02384246,0.002404765,0.4807062,0.4752571,0.0003619603],"study_design_candidate":"theoretical_or_conceptual","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.004103177,0.7056663,0.1404813,0.1403858,0.002445499,0.0001538573,0.0005625061,0.0009157399,0.005285816],"genre_scores_gemma":[0.0287093,0.641158,0.3074889,0.01112487,0.005856345,0.0006311741,0.001310272,0.0004278524,0.003293255],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.06149997,"threshold_uncertainty_score":0.3252468,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02508246446712335,"score_gpt":0.2890784614231944,"score_spread":0.263995996956071,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}