{"id":"W4399295845","doi":"10.1101/2024.05.30.596754","title":"A High-quality Oxford Nanopore Assembly of the Hourglass Dolphin ( <i>Lagenorhynchus cruciger</i> ) Genome","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canarie","funders":"","keywords":"Hourglass; Nanopore; Nanopore sequencing; Quality (philosophy); Genome; Sequence assembly; Computer science; Biology; Physics; Nanotechnology; Materials science; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002995826,0.0004952287,0.0005759963,0.0004126876,0.0006495329,0.000592619,0.0003475169,0.0004303004,0.001351242],"category_scores_gemma":[0.0004479474,0.0002924334,0.0006233699,0.000415769,0.0001741395,0.0002814195,0.0005002388,0.0005349508,0.0007666262],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004564849,"about_ca_system_score_gemma":0.0007929667,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.008233189,"about_ca_topic_score_gemma":0.01570162,"domain_scores_codex":[0.9997932,0.00001651469,0.00001522671,0.00008471007,0.00005848845,0.00003175183],"domain_scores_gemma":[0.9997492,0.00004452822,0.00004120607,0.00003292885,0.00008352068,0.00004847046],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001138326,0.00002745123,0.003426443,0.0001945341,0.00005496246,0.0003897844,0.0002309912,0.00143751,0.9768367,0.0002739146,0.001286923,0.01572689],"study_design_scores_gemma":[0.00004253438,0.0004096141,0.08533584,0.0001166466,0.0002413566,0.001260782,0.0006010021,0.03547404,0.8197364,0.0005458978,0.05611859,0.0001172277],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8144559,0.001435305,0.1525067,0.0003717319,0.00024411,0.0003757245,0.02263144,0.003290162,0.004689022],"genre_scores_gemma":[0.5500009,0.0009632593,0.3862504,0.0001876154,0.0000368561,0.000306082,0.05308401,0.000919643,0.00825133],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.008233189,"threshold_uncertainty_score":0.01637053,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01245140832419813,"score_gpt":0.2258370833598906,"score_spread":0.2133856750356925,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}