{"id":"W4399484712","doi":"10.1093/gbe/evae122","title":"Telomere-to-telomere Genome Assembly of the Clubroot Pathogen <i>Plasmodiophora Brassicae</i>","year":2024,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Plant Disease Resistance and Genetics","field":"Agricultural and Biological Sciences","cited_by":17,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"Natural Sciences and Engineering Research Council of Canada; Canola Council of Canada; Fonds de recherche du Québec – Nature et technologies; Alberta Canola Producers Commission; Université Laval","keywords":"Clubroot; Biology; Telomere; Genome; Genetics; Pathogen; Gene; Botany; Brassica","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001672902,0.0001335233,0.0001684707,0.00001759754,0.0001903321,0.00002462799,0.0002059105,0.0001495533,0.00003680681],"category_scores_gemma":[0.00001777987,0.00004923281,0.00009261432,0.0003980512,0.0001150163,0.00004085668,0.0001092298,0.00009815845,0.00005545603],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003304131,"about_ca_system_score_gemma":0.00002735607,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00003101975,"about_ca_topic_score_gemma":0.000135419,"domain_scores_codex":[0.9990401,0.00008796404,0.000191036,0.0003173141,0.0000909049,0.0002726935],"domain_scores_gemma":[0.9996701,0.00007439672,0.0000445507,0.0000769597,0.0000356421,0.00009834811],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00003225029,0.00002088221,0.006939258,0.00002387761,0.00002547635,0.000002209136,0.00003065699,0.00001077032,0.9866238,0.001544931,0.0002014218,0.004544464],"study_design_scores_gemma":[0.00005599121,0.0001843699,0.9149014,0.00003031932,0.00003896258,0.00001638666,0.0000715326,0.0000363238,0.002085412,0.002435271,0.07996267,0.0001813823],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9841064,0.01316908,0.00002087002,0.00110148,0.0002190713,0.0002010003,0.0007483096,0.00003936512,0.0003944493],"genre_scores_gemma":[0.9988893,0.0004304789,0.00003010353,0.0001793022,0.0002175688,0.00001446037,0.00008965966,0.000001265363,0.0001479008],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9845384,"threshold_uncertainty_score":0.2007656,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008672810261148977,"score_gpt":0.2120112854673498,"score_spread":0.2033384752062009,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}