{"id":"W4399527281","doi":"10.1371/journal.ppat.1011915","title":"Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice","year":2024,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; Vanderbilt University Medical Center; Texas Biomedical Research Institute; National Institutes of Health; Massachusetts Life Sciences Center; Ohio State University; Vanderbilt University; National Heart, Lung, and Blood Institute; Tufts University; American Lung Association","keywords":"Biology; Single-nucleotide polymorphism; Mycobacterium tuberculosis; Genetics; Tuberculosis; Candidate gene; Population; Genome-wide association study; Genotype; Gene; Immunology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003471927,0.0005000677,0.0002882698,0.0007805025,0.0001455908,0.000312555,0.0003008342,0.0003569768,0.0007034269],"category_scores_gemma":[0.0003650317,0.0002417112,0.0005492375,0.0004025735,0.0002994978,0.0001105725,0.0003024147,0.0004463413,0.00008646171],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003559439,"about_ca_system_score_gemma":0.0002001371,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000820932,"about_ca_topic_score_gemma":0.001203595,"domain_scores_codex":[0.9997894,0.00004908341,0.00001320795,0.00008524275,0.00003694781,0.00002606744],"domain_scores_gemma":[0.9997599,0.00009591854,0.00009732058,0.00001537539,0.000007851975,0.00002360706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004511803,0.00006577663,0.00574623,0.00003981174,0.00006971044,0.000192938,0.00005505869,0.005783651,0.981505,0.001138008,0.0000458427,0.004906775],"study_design_scores_gemma":[0.000473656,0.001870712,0.1030961,0.00006243526,0.0005162812,0.001432731,0.0001817569,0.1618944,0.7206399,0.00452608,0.005214019,0.00009188407],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9845701,0.0001146117,0.01447381,0.00004443606,0.00000541166,0.00002057143,0.0003989684,0.0001196436,0.0002524848],"genre_scores_gemma":[0.9748403,0.0002304966,0.02298571,0.00007203969,0.000004350142,0.0001038397,0.0008313147,0.00003914624,0.0008928947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.000820932,"threshold_uncertainty_score":0.00258255,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03894065544232569,"score_gpt":0.2777400592582657,"score_spread":0.23879940381594,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}