{"id":"W4399527281","doi":"10.1371/journal.ppat.1011915","title":"Systems genetics uncover new loci containing functional gene candidates in Mycobacterium tuberculosis-infected Diversity Outbred mice","year":2024,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Tuberculosis Research and Epidemiology","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; Vanderbilt University Medical Center; Texas Biomedical Research Institute; National Institutes of Health; Massachusetts Life Sciences Center; Ohio State University; Vanderbilt University; National Heart, Lung, and Blood Institute; Tufts University; American Lung Association","keywords":"Biology; Single-nucleotide polymorphism; Mycobacterium tuberculosis; Genetics; Tuberculosis; Candidate gene; Population; Genome-wide association study; Genotype; Gene; Immunology; Medicine; Pathology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004220941,0.0002733402,0.0005825589,0.0003304875,0.0001309072,0.00006022324,0.0001178341,0.0002549082,0.0003241783],"category_scores_gemma":[0.0003998906,0.0002410182,0.0001720445,0.0004700252,0.00007093277,0.0001110461,0.0002820154,0.0004906758,0.0004402448],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004840728,"about_ca_system_score_gemma":0.0004165893,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001381882,"about_ca_topic_score_gemma":0.0003266484,"domain_scores_codex":[0.9975784,0.0002478902,0.0004476369,0.0005901076,0.0004389254,0.0006970098],"domain_scores_gemma":[0.9986412,0.0003755352,0.00005208957,0.000307068,0.0001565678,0.0004675169],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.000454357,0.0001637303,0.7467679,0.0003881575,0.0006674528,0.0007980295,0.0005499259,0.0003524234,0.2335329,0.00007797878,0.01574432,0.0005028142],"study_design_scores_gemma":[0.00283074,0.0008950724,0.9376558,0.0005680724,0.000737389,0.000424582,0.0003026427,0.03850621,0.006234149,0.0001164483,0.01110076,0.0006281022],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9914834,0.004553878,0.0003134024,0.001402822,0.0005749087,0.0005359887,0.0002914308,0.0001830343,0.0006610652],"genre_scores_gemma":[0.9962055,0.0007299687,0.0002270369,0.000554299,0.0007606072,0.00003060491,0.0005932767,0.00004297492,0.0008557236],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2272988,"threshold_uncertainty_score":0.9828438,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03894065544232569,"score_gpt":0.2777400592582657,"score_spread":0.23879940381594,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}