{"id":"W4399567357","doi":"10.1038/s41586-024-07546-2","title":"Ancient Plasmodium genomes shed light on the history of human malaria","year":2024,"lang":"en","type":"article","venue":"Nature","topic":"Malaria Research and Control","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"MacEwan University; Lakehead University; Dalhousie University","funders":"Research Nova Scotia; Max-Planck-Institut für Evolutionäre Anthropologie; Sigrid Juséliuksen Säätiö; Ministerio de Ciencia e Innovación; Akademie Věd České Republiky; Max-Planck-Gesellschaft; H2020 European Research Council; Universität Konstanz; Magnus Ehrnroothin Säätiö; Fundación Palarq; Koneen Säätiö; Emil Aaltosen Säätiö; Generalitat Valenciana; Suomen Kulttuurirahasto; European Commission; National Science Foundation; Baden-Württemberg Stiftung; Ministerio de Educación, Cultura y Deporte; University of Otago; Ella ja Georg Ehrnroothin Säätiö; Agencia Estatal de Investigación; Helsingin Yliopisto; Jane ja Aatos Erkon Säätiö","keywords":"Malaria; Plasmodium (life cycle); Genome; Protozoa; Biology; Evolutionary biology; Genus; Plasmodium falciparum; Resistance (ecology); Genetics; Zoology; Parasite hosting; Ecology; Gene; Immunology; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004756344,0.0001939304,0.0002533754,0.0007583636,0.000567107,0.0009216878,0.0001950921,0.0004457377,0.003129767],"category_scores_gemma":[0.001273707,0.0002271932,0.000154809,0.001357593,0.0004614415,0.0008283151,0.001168069,0.0008775916,0.0006246021],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000273151,"about_ca_system_score_gemma":0.0002108965,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001365783,"about_ca_topic_score_gemma":0.002772141,"domain_scores_codex":[0.999843,0.00003496122,0.000006972479,0.00005940981,0.0000307378,0.00002498422],"domain_scores_gemma":[0.9993537,0.0002498264,0.0001314177,0.0001035353,0.00007158532,0.00008994357],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001053697,0.00007862701,0.4623069,0.002318099,0.0006581429,0.00319248,0.009066042,0.005775338,0.2183377,0.04026387,0.0161612,0.2407879],"study_design_scores_gemma":[0.00001920048,0.0001221978,0.8536198,0.0003894751,0.0001788147,0.001749173,0.001537347,0.002299008,0.006021489,0.02274741,0.1112585,0.00005743093],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.944855,0.01988333,0.01083964,0.003478523,0.0002115859,0.00001458209,0.01144518,0.0002149763,0.009057108],"genre_scores_gemma":[0.9849857,0.005583405,0.004402413,0.0007412508,0.0001977328,0.00001039388,0.00295127,0.00006774479,0.001060224],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003129767,"threshold_uncertainty_score":0.01047015,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01233037103946064,"score_gpt":0.2704776836621384,"score_spread":0.2581473126226778,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}