{"id":"W4399567357","doi":"10.1038/s41586-024-07546-2","title":"Ancient Plasmodium genomes shed light on the history of human malaria","year":2024,"lang":"en","type":"article","venue":"Nature","topic":"Malaria Research and Control","field":"Medicine","cited_by":39,"is_retracted":false,"has_abstract":true,"ca_institutions":"MacEwan University; Lakehead University; Dalhousie University","funders":"Research Nova Scotia; Max-Planck-Institut für Evolutionäre Anthropologie; Sigrid Juséliuksen Säätiö; Ministerio de Ciencia e Innovación; Akademie Věd České Republiky; Max-Planck-Gesellschaft; H2020 European Research Council; Universität Konstanz; Magnus Ehrnroothin Säätiö; Fundación Palarq; Koneen Säätiö; Emil Aaltosen Säätiö; Generalitat Valenciana; Suomen Kulttuurirahasto; European Commission; National Science Foundation; Baden-Württemberg Stiftung; Ministerio de Educación, Cultura y Deporte; University of Otago; Ella ja Georg Ehrnroothin Säätiö; Agencia Estatal de Investigación; Helsingin Yliopisto; Jane ja Aatos Erkon Säätiö","keywords":"Malaria; Plasmodium (life cycle); Genome; Protozoa; Biology; Evolutionary biology; Genus; Plasmodium falciparum; Resistance (ecology); Genetics; Zoology; Parasite hosting; Ecology; Gene; Immunology; Computer science","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.000275618,0.00008511456,0.0001458955,0.0001045849,0.00003105352,0.0000117608,0.0001307311,0.0003650825,0.001538155],"category_scores_gemma":[0.00010072,0.00004646448,0.0001006518,0.0001048626,0.00004587118,0.00002023932,0.00002700527,0.001784098,0.00006734022],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002347831,"about_ca_system_score_gemma":0.0002666312,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000006408899,"about_ca_topic_score_gemma":0.000005891507,"domain_scores_codex":[0.9990886,0.00003670104,0.0001059879,0.000174653,0.0004104519,0.000183593],"domain_scores_gemma":[0.9994682,0.00006923021,0.0000187825,0.0002960863,0.00006890263,0.00007880331],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002562485,0.00009560267,0.00009275653,0.0001862558,0.0001091381,0.0001547035,0.0004526972,6.004602e-7,0.1732141,0.1879309,0.6360494,0.00145759],"study_design_scores_gemma":[0.0006575249,0.000433806,0.009634447,0.0001515686,0.00005799738,0.00001206476,0.00004056009,0.000461744,0.006042607,0.0003590574,0.9820721,0.00007652058],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"other","genre_gemma":"empirical","genre_scores_codex":[0.1806477,0.1496037,0.00002362172,0.282588,0.004393152,0.00180418,0.00005079148,0.0002454384,0.3806434],"genre_scores_gemma":[0.9567851,0.0000288871,0.0000130642,0.002256884,0.0002765219,0.0000204203,0.000009174239,0.00001273541,0.04059722],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7761374,"threshold_uncertainty_score":0.9993746,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01233037103946064,"score_gpt":0.2704776836621384,"score_spread":0.2581473126226778,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}