{"id":"W4399615552","doi":"10.1101/2024.06.12.598706","title":"Prevalent chromosome fusion in <i>Vibrio cholerae</i> O1","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill Genome Centre; McGill University","funders":"","keywords":"Vibrio cholerae; Biology; Chromosome; Vibrionaceae; Homologous chromosome; Genetics; Fusion; Pathogen; Circular bacterial chromosome; Genome; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002085643,0.0002199559,0.0002282976,0.0006635095,0.0005199629,0.0004741471,0.0002031322,0.0005075074,0.001671162],"category_scores_gemma":[0.0008555949,0.0001574562,0.0002175959,0.0004826475,0.0004785079,0.0001764321,0.000592928,0.0005043211,0.0002859584],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004536419,"about_ca_system_score_gemma":0.0002317925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003885251,"about_ca_topic_score_gemma":0.002239287,"domain_scores_codex":[0.9995752,0.00004622092,0.00003107153,0.0001271545,0.0001018608,0.0001184797],"domain_scores_gemma":[0.9995939,0.00009819899,0.0001431325,0.00004435509,0.00006849167,0.00005192554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008006582,0.00009059107,0.08722669,0.0001729321,0.00006304416,0.005891462,0.0009594709,0.0004079669,0.8960845,0.0005465722,0.0004966488,0.007259529],"study_design_scores_gemma":[0.00007159131,0.001135586,0.6142575,0.00005222948,0.0001404419,0.04275021,0.002151165,0.0009897251,0.3262559,0.0006454843,0.01147743,0.0000727534],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9978486,0.0003600518,0.0005615513,0.00005833702,0.00001151934,0.00001440838,0.0002873218,0.00002321389,0.0008349617],"genre_scores_gemma":[0.9990497,0.0001049561,0.0001530954,0.00002203275,0.000004594764,0.000003692546,0.000379012,0.000004554471,0.0002782184],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003885251,"threshold_uncertainty_score":0.007725239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01219526409496434,"score_gpt":0.2452978290879864,"score_spread":0.233102564993022,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}