{"id":"W4399617928","doi":"10.1016/j.syapm.2024.126524","title":"Commentary on the proposed Section 10 amendments to the International Code of Nomenclature of Prokaryotes regarding Candidatus names","year":2024,"lang":"en","type":"article","venue":"Systematic and Applied Microbiology","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":false,"ca_institutions":"","funders":"Agharkar Research Institute; Wageningen University and Research; University of Massachusetts Amherst; Indian Institute of Science Education and Research Kolkata; Vlaamse regering; Indian Institute of Science Education and Research Mohali; Universität Duisburg-Essen; Universidade Federal do Rio de Janeiro; Yenepoya Research Centre; University of Hyderabad; RWTH Aachen University; Centre de Coopération Internationale en Recherche Agronomique pour le Développement; Universidad Nacional de Mar del Plata; California State University, Northridge; University of New South Wales; Universitat de València; Universität Wien; University of Queensland; Suomen Ympäristökeskus; University of Delhi; Universidade de São Paulo; RMIT University; Consejo Nacional de Investigaciones Científicas y Técnicas; King Abdullah University of Science and Technology; University of Pretoria; King's College London; Canadian Patient Safety Institute; James Hutton Institute; BAIF Development Research Foundation; Portland State University; Institute of Microbiology, Chinese Academy of Sciences; Montana State University; University of Canterbury; Northumbria University; University of Carthage; Canadian Institute for Advanced Research; Chinese Academy of Sciences; Universität Innsbruck; North Carolina State University; McMaster University; Georgia Institute of Technology","keywords":"Nomenclature; Taxon; Biology; Candidatus; International Code of Zoological Nomenclature; Correct name; Type (biology); Section (typography); Linguistics; Evolutionary biology; Genealogy; Zoology; Botany; Ecology; Genetics; Taxonomy (biology); History; Philosophy; Computer science; Gene; Genome","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002557995,0.00009530449,0.0001756715,0.00002751615,0.00005733124,0.00001153486,0.0001459143,0.00005573169,0.000007271076],"category_scores_gemma":[0.00001556431,0.00004828262,0.00003877774,0.00004125235,0.00007401101,3.36345e-7,0.0001156732,0.00005098611,0.000002277003],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001076685,"about_ca_system_score_gemma":0.00001464979,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000810422,"about_ca_topic_score_gemma":0.00001603924,"domain_scores_codex":[0.9994441,0.00004413677,0.0002175553,0.0001696858,0.00003584432,0.0000886988],"domain_scores_gemma":[0.9996647,0.00005479101,0.00008116505,0.0001583143,0.00002861293,0.0000124547],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0000496377,0.00001391158,0.00005079448,0.0009579243,0.000289522,1.386376e-7,0.0004032267,0.00001636032,0.9870762,0.0009629905,0.01014138,0.0000379528],"study_design_scores_gemma":[0.0004159734,0.0004806647,0.0001023663,0.001097103,0.0001217015,0.00003433525,0.001743842,0.00003750613,0.9709252,0.0003559437,0.02449864,0.0001866996],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9932307,0.001476737,0.000214861,0.002633346,0.0003932945,0.001025492,0.0001606583,0.000002773481,0.0008621134],"genre_scores_gemma":[0.9988589,0.00004704609,0.000094938,0.0005605509,0.0001091869,0.00006465939,0.00003719741,0.000007080749,0.0002204454],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01615094,"threshold_uncertainty_score":0.1968908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007250090836028438,"score_gpt":0.2176649943697442,"score_spread":0.2104149035337158,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}