{"id":"W4399752143","doi":"10.17504/protocols.io.bp2l6223dgqe/v1","title":"DNA Extraction from 0.22µm Sterivex Filters - Qiagen Blood and Tissue with Inhibitor Removal v1","year":2024,"lang":"en","type":"preprint","venue":"","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Tula Foundation; University of British Columbia","funders":"","keywords":"Amplicon; DNA extraction; Extraction (chemistry); Polymerase chain reaction; genomic DNA; Biology; DNA; Chromatography; Chemistry; Gene; Biochemistry","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003613197,0.003103793,0.002970809,0.003947099,0.002171397,0.001478251,0.003483287,0.001464865,0.04738625],"category_scores_gemma":[0.004019919,0.001596636,0.001992171,0.002698496,0.001596318,0.0008556006,0.001847317,0.00329444,0.07419477],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005808513,"about_ca_system_score_gemma":0.001996185,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002360691,"about_ca_topic_score_gemma":0.006507293,"domain_scores_codex":[0.996168,0.0006255545,0.000410852,0.001161339,0.001044926,0.0005893842],"domain_scores_gemma":[0.9978402,0.0005919479,0.0001555519,0.0005994496,0.0005782475,0.0002346071],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003264329,0.0003297123,0.001566221,0.002432572,0.0001229085,0.0007017265,0.0005301671,0.0003062693,0.8985464,0.001903808,0.03146192,0.06177204],"study_design_scores_gemma":[0.0001631057,0.001297318,0.01515869,0.0007571091,0.0003773653,0.002174552,0.000299699,0.001760647,0.4089312,0.002524485,0.5663185,0.0002373187],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.05081444,0.005612887,0.7994247,0.0009599506,0.00185543,0.01845871,0.05697261,0.02416316,0.04173815],"genre_scores_gemma":[0.03754693,0.006699345,0.6081597,0.001641125,0.0006637952,0.01670636,0.2174321,0.006740381,0.1044103],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.04738625,"threshold_uncertainty_score":0.1585228,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01062682924613984,"score_gpt":0.2363255239757725,"score_spread":0.2256986947296327,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}