{"id":"W4399754529","doi":"10.1007/978-1-0716-3898-9_2","title":"In Silico Typing and Identification Confirmation of Isolates","year":2024,"lang":"en","type":"article","venue":"Methods in molecular biology","topic":"Silicon Effects in Agriculture","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal; University of Saskatchewan","funders":"","keywords":"In silico; Typing; Identification (biology); Computational biology; Biology; Microbiology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002386386,0.001117113,0.001139197,0.00127543,0.0005827011,0.001520866,0.00083018,0.001355199,0.002185423],"category_scores_gemma":[0.004232842,0.0007294881,0.001429061,0.0009351858,0.0003548617,0.0005047315,0.0007899085,0.0009503066,0.00264947],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003353182,"about_ca_system_score_gemma":0.0008911624,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001005163,"about_ca_topic_score_gemma":0.001269928,"domain_scores_codex":[0.9962148,0.001099382,0.0004591706,0.0007322569,0.001032661,0.0004618621],"domain_scores_gemma":[0.9959335,0.002025885,0.0004389026,0.000837539,0.0006415433,0.0001225967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00100694,0.0006912221,0.03136259,0.0003905612,0.00008471,0.000446318,0.0002825617,0.002748488,0.9430028,0.0005130249,0.0005657051,0.01890508],"study_design_scores_gemma":[0.00004820979,0.0007090541,0.01662725,0.00005464417,0.0002696461,0.0008387647,0.0002881173,0.02164459,0.9529069,0.0004777702,0.006099141,0.00003592381],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8380709,0.0005606813,0.1454871,0.0004199127,0.000304338,0.000834612,0.00870398,0.00100905,0.004609431],"genre_scores_gemma":[0.8321873,0.0005357544,0.1459719,0.0002839382,0.00006605291,0.0004166559,0.01536929,0.0002303522,0.004938654],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002386386,"threshold_uncertainty_score":0.01262057,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01650246479421002,"score_gpt":0.3570303034624702,"score_spread":0.3405278386682602,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}