{"id":"W4399805565","doi":"10.1099/mgen.0.001257","title":"Plasmid genomic epidemiology of carbapenem-hydrolysing class D β-lactamase (CDHL)-producing Enterobacterales in Canada, 2010−2021","year":2024,"lang":"en","type":"article","venue":"Microbial Genomics","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"North York General Hospital; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Plasmid; Biology; Klebsiella pneumoniae; Horizontal gene transfer; Mobile genetic elements; Genome; Genetics; Transposable element; Gene; Microbiology; Virology; Escherichia coli","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003105069,0.0005973504,0.0004323608,0.003802888,0.002234344,0.001743739,0.0008875969,0.0004338537,0.001445178],"category_scores_gemma":[0.001025293,0.0003842432,0.0004131412,0.004990605,0.001008737,0.0002187331,0.0007072786,0.0004878941,0.0002152027],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02137973,"about_ca_system_score_gemma":0.0360976,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.993339,"about_ca_topic_score_gemma":0.9948054,"domain_scores_codex":[0.9992744,0.00001471931,0.00003244336,0.0001579736,0.00033382,0.0001867045],"domain_scores_gemma":[0.9984071,0.0000488839,0.0001962328,0.00003013132,0.0009196611,0.0003980035],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003873724,0.00007494898,0.9633558,0.0001816319,0.0000812974,0.0003684227,0.00158891,0.0006385784,0.01203525,0.0002426477,0.001670892,0.01937414],"study_design_scores_gemma":[0.000008276056,0.00004316572,0.9956671,0.00003680126,0.00003362737,0.0001563091,0.001184061,0.0003297282,0.0004338585,0.00001632632,0.002073851,0.00001697618],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9864128,0.001804993,0.0003730149,0.0001762335,0.00001566108,0.000111421,0.008989946,0.00003646484,0.002079598],"genre_scores_gemma":[0.9895703,0.001772094,0.0008478529,0.0001436345,0.000007094724,0.00002797019,0.005625781,0.0000134373,0.001991845],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02137973,"threshold_uncertainty_score":0.1551216,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01199855918142465,"score_gpt":0.2281380362394926,"score_spread":0.2161394770580679,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}