{"id":"W4399872594","doi":"10.1093/aob/mcae065","title":"Transcriptome sequencing data provide a solid base to understand the phylogenetic relationships, biogeography and reticulated evolution of the genus <i>Zamia</i> L. (Cycadales: Zamiaceae)","year":2024,"lang":"en","type":"article","venue":"Annals of Botany","topic":"Botany and Geology in Latin America and Caribbean","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Université Laval; National Science Foundation","keywords":"Biology; Biogeography; Phylogenetic tree; Evolutionary biology; Genus; Botany; Phylogenetics; Ecology; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006351404,0.0001272464,0.0001741301,0.00002026153,0.0002741844,0.00003519639,0.000392957,0.00009906081,0.00003027932],"category_scores_gemma":[0.0001052611,0.00004389756,0.0001060567,0.0009170473,0.0004611363,0.00009755846,0.0001153206,0.0001855138,0.000002170587],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009809142,"about_ca_system_score_gemma":0.0000325974,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003121466,"about_ca_topic_score_gemma":0.0004065059,"domain_scores_codex":[0.9987274,0.0002383722,0.0002996611,0.0003133075,0.0002061577,0.000215115],"domain_scores_gemma":[0.9992118,0.0003096175,0.00009653271,0.0002420509,0.00007644219,0.00006358758],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009767561,0.00007080477,0.03548731,0.0000902973,0.000231338,0.000007086435,0.001956188,0.00007059395,0.9315612,0.005037494,0.00329649,0.02209357],"study_design_scores_gemma":[0.0003262157,0.001174255,0.8997799,0.001034717,0.0005001045,0.0001008629,0.01898643,0.005207049,0.0246837,0.02350563,0.02390332,0.0007978331],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9806402,0.007326981,0.00008817003,0.01091902,0.0001119849,0.0003824751,0.0002810606,0.00002747814,0.0002226563],"genre_scores_gemma":[0.9991835,0.0002682645,0.00004924708,0.0003733025,0.00005201922,0.00000585444,0.00001098987,0.000001652298,0.00005514713],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9068775,"threshold_uncertainty_score":0.2108832,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07083907220189681,"score_gpt":0.2717860447223364,"score_spread":0.2009469725204396,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}