{"id":"W4399881501","doi":"10.1016/j.heliyon.2024.e33372","title":"Decoding the resistome, virulome and mobilome of clinical versus aquatic Acinetobacter baumannii in southern Romania","year":2024,"lang":"en","type":"article","venue":"Heliyon","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Ontario Ministry of Research and Innovation; Unitatea Executiva pentru Finantarea Invatamantului Superior, a Cercetarii, Dezvoltarii si Inovarii; Ministerul Cercetării, Inovării şi Digitalizării","keywords":"Resistome; Acinetobacter baumannii; Mobile genetic elements; Biology; Antibiotic resistance; Microbiology; Plasmid; Antibiotics; Genetics; Gene; Bacteria","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000521231,0.0001202327,0.0001933625,0.00004618336,0.0000290846,0.00003457227,0.0001512044,0.000143284,0.00002593282],"category_scores_gemma":[0.0001551451,0.00008610991,0.00007675646,0.0001002757,0.0001465649,0.000004998272,0.00009612572,0.0001320978,0.00003280757],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000010605,"about_ca_system_score_gemma":0.00004471079,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00001630483,"about_ca_topic_score_gemma":0.0003072076,"domain_scores_codex":[0.9988875,0.0001057669,0.000422367,0.0003123546,0.0001014666,0.0001704929],"domain_scores_gemma":[0.9994303,0.0001239184,0.00007071688,0.0003186381,0.00001739903,0.00003903484],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.002627761,0.000178349,0.2192513,0.001409472,0.0003634843,0.00007036849,0.00120227,0.00001050248,0.7547553,0.0009249941,0.001334611,0.01787154],"study_design_scores_gemma":[0.005062448,0.001992263,0.881351,0.00250177,0.0002572387,0.00004237429,0.003002521,0.0007844181,0.0314853,0.0004521536,0.07190406,0.001164472],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9924383,0.006143373,0.00005089264,0.0001294046,0.0003984528,0.0001347682,0.00001306933,0.00001004688,0.0006816793],"genre_scores_gemma":[0.9972427,0.001522289,0.0002136498,0.00004863155,0.0002058749,0.000004535505,0.00001399169,0.00002231418,0.0007259563],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.72327,"threshold_uncertainty_score":0.351146,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02998669470441901,"score_gpt":0.3316389234691755,"score_spread":0.3016522287647564,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}