{"id":"W4399901153","doi":"10.1101/2024.06.20.599855","title":"Micro-plaque assays: A high-throughput method to detect, isolate, and characterize bacteriophages","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Throughput; Computational biology; Biology; Computer science","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001846663,0.001601303,0.0009966979,0.00183976,0.0005791258,0.001183006,0.001000652,0.0008019464,0.002635014],"category_scores_gemma":[0.001449485,0.0006784491,0.0007323296,0.0005837103,0.0006650197,0.0006959776,0.001354347,0.002252026,0.003912944],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003343551,"about_ca_system_score_gemma":0.000483421,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003339193,"about_ca_topic_score_gemma":0.0006373051,"domain_scores_codex":[0.9973907,0.0005600402,0.0001181989,0.0004230782,0.001367718,0.0001403772],"domain_scores_gemma":[0.9986687,0.0005484297,0.0001552774,0.0002551595,0.0002597097,0.00011272],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00002919714,0.0000590517,0.0003362801,0.00009383309,0.00002277678,0.00003312497,0.00004692359,0.0002035207,0.9899332,0.0002837847,0.0007676861,0.008190605],"study_design_scores_gemma":[0.000009059725,0.0001213963,0.001792236,0.000021166,0.00002090039,0.0002548878,0.00002727233,0.002953739,0.9858783,0.000359774,0.008523127,0.00003811164],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.1270662,0.004661656,0.8500887,0.0007869306,0.0004878492,0.0008743952,0.002824063,0.006670112,0.006540059],"genre_scores_gemma":[0.2801341,0.004862764,0.6835502,0.000513208,0.0003060092,0.001915989,0.004888825,0.001164207,0.02266466],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002635014,"threshold_uncertainty_score":0.009766161,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009525457711348903,"score_gpt":0.2295182607501222,"score_spread":0.2199928030387733,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}