{"id":"W4399932709","doi":"10.3201/eid3007.231594","title":"Genomic Epidemiology of Large Blastomycosis Outbreak, Ontario, Canada, 2021","year":2024,"lang":"en","type":"article","venue":"Emerging infectious diseases","topic":"Fungal Infections and Studies","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Outbreak; Epidemiology; Virology; Molecular epidemiology; Blastomycosis; Medicine; Biology; Genetics; Genotype; Immunology; Pathology; Gene","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0001476781,0.0001759809,0.0004670369,0.0001699817,0.0001578438,0.000005974321,0.00003944251,0.00005052214,0.001978946],"category_scores_gemma":[0.0002931718,0.0001523577,0.0002186445,0.000248971,0.0000604109,0.00004515406,0.00006344745,0.0001960229,0.00003454465],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005697379,"about_ca_system_score_gemma":0.000958512,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.8234575,"about_ca_topic_score_gemma":0.9120579,"domain_scores_codex":[0.9988354,0.00005960624,0.0003607874,0.0002927566,0.0001158164,0.0003355927],"domain_scores_gemma":[0.9991537,0.0003230939,0.0000593574,0.0002199314,0.00009098116,0.0001529262],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00001958941,0.0001479853,0.9570337,0.000219211,0.0005096329,0.00005542322,0.0001962254,0.0001533072,0.0001131247,0.0009122783,0.03972241,0.000917104],"study_design_scores_gemma":[0.0003644884,0.0001790734,0.8760352,0.0001926823,0.0004655503,0.00005781582,0.0001063131,0.0003524707,0.00005245668,0.0001959868,0.1218351,0.0001628859],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9775826,0.01151628,0.0002103758,0.0007928872,0.001465922,0.0001904634,0.000142513,0.0001241127,0.007974886],"genre_scores_gemma":[0.9963999,0.000255363,0.00002474779,0.0004150967,0.0002763832,0.00004066965,0.00003648522,0.00002385586,0.002527446],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.08860038,"threshold_uncertainty_score":0.9989334,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01223236781658866,"score_gpt":0.2799515683503779,"score_spread":0.2677192005337893,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}