{"id":"W4400092930","doi":"10.1093/infdis/jiae245","title":"<i>Treponema pallidum</i> Periplasmic and Membrane Proteins Are Recognized by Circulating and Skin CD4+ T Cells","year":2024,"lang":"en","type":"article","venue":"The Journal of Infectious Diseases","topic":"Syphilis Diagnosis and Treatment","field":"Medicine","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Victoria","funders":"National Center for Advancing Translational Sciences; National Institute of Allergy and Infectious Diseases; National Institutes of Health","keywords":"Treponema; Antigen; Biology; Immunology; T cell; Virology; Epitope; T lymphocyte; ELISPOT; Immune system; Syphilis; CD8","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002176377,0.000156452,0.0003224718,0.00008893655,0.0001245065,0.00009279987,0.00003606365,0.00004102894,0.00006838461],"category_scores_gemma":[0.0001219542,0.00009017962,0.000115901,0.0001214991,0.00007949214,0.00009982392,0.00002094574,0.0001667408,0.000004680819],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006113156,"about_ca_system_score_gemma":0.00007050493,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000376436,"about_ca_topic_score_gemma":0.00001247197,"domain_scores_codex":[0.9991081,0.00009669283,0.0003069102,0.0001330865,0.0002122135,0.0001429788],"domain_scores_gemma":[0.9990621,0.0003660728,0.0001795192,0.0001211859,0.00008420103,0.0001869688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001349753,0.00402349,0.6396329,0.003994091,0.004318052,0.002891274,0.004662776,0.0001942425,0.2230234,0.00004673042,0.01569694,0.1001664],"study_design_scores_gemma":[0.02924243,0.008354692,0.6263824,0.01905729,0.01780494,0.03015319,0.004247903,0.003240246,0.2489811,0.002450348,0.008422725,0.001662788],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9771271,0.02125575,0.00002418781,0.0008740105,0.0001485531,0.0003472279,0.00003825046,0.00003872526,0.0001461985],"genre_scores_gemma":[0.9947324,0.0047325,0.00002080033,0.0002426546,0.0001884954,0.00001489004,0.000003043155,0.00002444254,0.00004072521],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.09850359,"threshold_uncertainty_score":0.3677418,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008368523914899171,"score_gpt":0.2422731960268621,"score_spread":0.2339046721119629,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}