{"id":"W4400092950","doi":"10.1101/2024.06.26.600781","title":"The Enterococcal Polysaccharide Antigen: from structure to biosynthesis and function","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Enterobacteriaceae and Cronobacter Research","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"National Research Council Canada","funders":"Biotechnology and Biological Sciences Research Council","keywords":"Polysaccharide; Biosynthesis; Function (biology); Microbiology; Antigen; Structure function; Chemistry; Computational biology; Biochemistry; Biology; Immunology; Cell biology; Physics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002124673,0.0004184241,0.0002654918,0.00009823354,0.0002020712,0.0006225631,0.0004914826,0.0004676018,0.00002863517],"category_scores_gemma":[0.00008598155,0.0003372677,0.0001198772,0.0001333756,0.0001033565,0.000006106931,0.001641158,0.0005164078,0.00004631765],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00005179802,"about_ca_system_score_gemma":0.0001913788,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00009786174,"about_ca_topic_score_gemma":0.00005381881,"domain_scores_codex":[0.9978575,0.0001200243,0.0002979038,0.001040695,0.0002201762,0.0004636774],"domain_scores_gemma":[0.9984251,0.00002598523,0.00009769261,0.001051739,0.0001453091,0.000254123],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001474797,0.00001836878,0.006758486,0.00006285658,0.0003053668,0.000007729415,0.000005194137,0.000001607251,0.991824,0.00003196344,0.0007978987,0.00003902462],"study_design_scores_gemma":[0.0001800433,0.0001076092,0.07696682,0.0001605631,0.00007799079,2.482659e-8,0.000007198675,0.00001532019,0.886987,0.000009775159,0.03508417,0.0004034589],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9931986,0.003431291,0.0002852993,0.0006146426,0.001174604,0.0004563619,0.0007717111,0.00006519006,0.000002277377],"genre_scores_gemma":[0.9971877,0.0009224731,0.0003402454,0.0002802645,0.001069477,0.00008512263,0.000002432684,0.00009755631,0.00001470666],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.104837,"threshold_uncertainty_score":0.9999079,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007542477285792714,"score_gpt":0.2218241068652486,"score_spread":0.2142816295794559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}