{"id":"W4400103582","doi":"10.1093/jnci/djae153","title":"Fecal, duodenal, and tumor microbiota composition of esophageal carcinoma patients, a longitudinal prospective cohort","year":2024,"lang":"en","type":"article","venue":"JNCI Journal of the National Cancer Institute","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"ZonMw; AstraZeneca; Roche Canada","keywords":"Gastroenterology; Internal medicine; Microbiome; Feces; Medicine; Prospective cohort study; Cohort; Oncology; Biology; Bioinformatics; Microbiology","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006471786,0.000305293,0.0004100032,0.0004433199,0.0005850529,0.0006717591,0.0002791462,0.0004233945,0.0009318743],"category_scores_gemma":[0.001079223,0.0004011486,0.0004489376,0.0006644324,0.0002382373,0.0005288868,0.0005832221,0.0006878574,0.0002440356],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000292838,"about_ca_system_score_gemma":0.0003474664,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.004334752,"about_ca_topic_score_gemma":0.005162967,"domain_scores_codex":[0.9996777,0.00006703572,0.00002886461,0.0001195678,0.00004329522,0.00006364513],"domain_scores_gemma":[0.9994615,0.00005073919,0.000170674,0.00007922663,0.00008741049,0.0001504982],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003483464,0.00005586415,0.9982151,0.000007902831,0.00005199584,0.00003928574,0.0000793889,0.00001675477,0.0004435537,0.000005710595,0.0001017437,0.0006343814],"study_design_scores_gemma":[0.00001813414,0.0003304786,0.998865,0.000005297173,0.00004487114,0.0001811106,0.0002288359,0.00009653855,0.00004968165,0.0000112319,0.0001654797,0.000003358692],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.999164,0.0001294208,0.00005758859,0.00001788343,0.000004273464,0.00001080229,0.0005083806,0.000001648144,0.0001059697],"genre_scores_gemma":[0.9987587,0.00008937815,0.000105918,0.00002896323,0.000007566817,0.00002040449,0.0008666877,0.000002102486,0.0001201947],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.004334752,"threshold_uncertainty_score":0.00861901,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01409721087852855,"score_gpt":0.2915584131730534,"score_spread":0.2774612022945248,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}