{"id":"W4400193530","doi":"10.1016/j.ijid.2024.107159","title":"The 2023 – 2024 multi-source mpox outbreaks of Clade I MPXV in sub-Saharan Africa: Alarm bell for Africa and the World","year":2024,"lang":"en","type":"letter","venue":"International Journal of Infectious Diseases","topic":"Poxvirus research and outbreaks","field":"Immunology and Microbiology","cited_by":24,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Danmarks Grundforskningsfond; Canadian Institutes of Health Research; National Research Foundation; World Health Organization","keywords":"Outbreak; Clade; Geography; Virology; Biology; Genetics; Phylogenetics","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006471858,0.0003058902,0.0005533941,0.0007106618,0.0001674278,0.0001609597,0.0008806072,0.000340029,0.0001238543],"category_scores_gemma":[0.0009375765,0.0001726588,0.0005914731,0.0002199287,0.000815294,0.0001053172,0.0002567639,0.00209065,0.00006772031],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001711048,"about_ca_system_score_gemma":0.0003263564,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00016516,"about_ca_topic_score_gemma":0.000479792,"domain_scores_codex":[0.997687,0.0004299485,0.0008600602,0.0002664811,0.000299369,0.0004571375],"domain_scores_gemma":[0.9954659,0.003107626,0.0005849293,0.0002166856,0.0005751536,0.00004970493],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.001187982,0.0001572218,0.0006699254,0.00008245315,0.002213467,0.00016326,0.000214861,0.00001895083,0.0008808702,0.00009731378,0.9890261,0.005287581],"study_design_scores_gemma":[0.003689598,0.0001463804,0.0008122402,0.0003850065,0.000282756,0.0002952502,0.00004837897,0.00002808528,0.000329399,0.001502189,0.9923075,0.000173231],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"review","genre_gemma":"empirical","genre_scores_codex":[0.008742868,0.5176446,0.0006969324,0.4396709,0.01761951,0.002410515,0.005543293,0.00008718757,0.007584097],"genre_scores_gemma":[0.607951,0.05724324,0.00007262171,0.05380032,0.01159725,0.0008151067,0.0007748263,0.0004114163,0.2673342],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.5992081,"threshold_uncertainty_score":0.908295,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01552095915198837,"score_gpt":0.2788039541863313,"score_spread":0.2632829950343429,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}