{"id":"W4400378439","doi":"10.1101/2024.07.02.600549","title":"Cryptic recombination and transposition drive structural variation to shape genomic plasticity and life history traits in a host generalist fungal plant pathogen","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Plant Pathogens and Fungal Diseases","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Agriculture and Agri-Food Canada; McGill University","funders":"","keywords":"Transposition (logic); Biology; Generalist and specialist species; Host (biology); Recombination; Fungal pathogen; Genetics; Pathogen; Gene; Evolutionary biology; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003003748,0.0002349986,0.0001889149,0.0005940048,0.0001450988,0.0003485905,0.0001540982,0.0002389606,0.001057714],"category_scores_gemma":[0.0004850895,0.0001370603,0.0003154486,0.000483413,0.000165133,0.0001598066,0.0002730224,0.0003373728,0.0001452502],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002250605,"about_ca_system_score_gemma":0.000155261,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001054781,"about_ca_topic_score_gemma":0.00217641,"domain_scores_codex":[0.9998153,0.0000295423,0.00001376424,0.0000722837,0.0000415265,0.00002767501],"domain_scores_gemma":[0.9995771,0.0001646246,0.0001218325,0.00004604537,0.00003543671,0.00005500094],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001649168,0.00003606217,0.0629329,0.00005578519,0.00007048062,0.00006851606,0.00007332196,0.001316138,0.928531,0.0002176327,0.00008688741,0.006446293],"study_design_scores_gemma":[0.00001986342,0.0003945611,0.858882,0.0000157654,0.0001312716,0.0006357654,0.0002158862,0.01690965,0.1203263,0.0005169446,0.001922947,0.00002896959],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963462,0.00009540961,0.002653284,0.00001304737,0.000001799793,0.000004967346,0.0005234698,0.00006039324,0.0003015092],"genre_scores_gemma":[0.9970488,0.00004468506,0.002011842,0.00002200194,0.000001605654,0.000006336379,0.0006664735,0.0000204243,0.0001777686],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001057714,"threshold_uncertainty_score":0.00353843,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009499687801159253,"score_gpt":0.189861150524037,"score_spread":0.1803614627228778,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}