{"id":"W4400439423","doi":"10.1098/rsos.240108","title":"Metagenomic profiling of nasopharyngeal samples from adults with acute respiratory infection","year":2024,"lang":"en","type":"article","venue":"Royal Society Open Science","topic":"Respiratory viral infections research","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"Human virome; Rhinovirus; Metagenomics; Biology; Virology; Human bocavirus; Microbiology; Concordance; Virus; Multiplex polymerase chain reaction; Respiratory tract infections; Polymerase chain reaction; Respiratory system; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003256969,0.000431078,0.0005661378,0.001086459,0.0004049286,0.0008305898,0.0002361115,0.0004238825,0.0003536398],"category_scores_gemma":[0.0006999643,0.000193498,0.0004089415,0.001020894,0.0002360136,0.0002730622,0.0005695438,0.0002418186,0.0001834057],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002129765,"about_ca_system_score_gemma":0.0002298867,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001753127,"about_ca_topic_score_gemma":0.0023219,"domain_scores_codex":[0.999519,0.00008979148,0.00004457855,0.0001652326,0.0001047853,0.0000767132],"domain_scores_gemma":[0.9998083,0.00003304584,0.00005432545,0.00001669302,0.00006148728,0.00002621096],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007568705,0.0001074875,0.6210936,0.0002454587,0.0003128362,0.0005094278,0.00128005,0.0008130647,0.3593962,0.00008830011,0.0003145082,0.01508213],"study_design_scores_gemma":[0.00001048217,0.0003908557,0.9578379,0.00006545179,0.0002650252,0.001694196,0.00216459,0.003213798,0.0312706,0.000197804,0.002859369,0.00002999309],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9954797,0.0009802026,0.0008417731,0.00004720248,0.00001336851,0.00002509196,0.002308059,0.00002363948,0.0002808351],"genre_scores_gemma":[0.9931434,0.0004826036,0.002375188,0.0001431543,0.00001779369,0.0000319577,0.00358591,0.00001215824,0.0002078055],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001753127,"threshold_uncertainty_score":0.003485918,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0556003446904459,"score_gpt":0.3813937589811529,"score_spread":0.325793414290707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}