{"id":"W4400439423","doi":"10.1098/rsos.240108","title":"Metagenomic profiling of nasopharyngeal samples from adults with acute respiratory infection","year":2024,"lang":"en","type":"article","venue":"Royal Society Open Science","topic":"Respiratory viral infections research","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University Medical Centre","funders":"","keywords":"Human virome; Rhinovirus; Metagenomics; Biology; Virology; Human bocavirus; Microbiology; Concordance; Virus; Multiplex polymerase chain reaction; Respiratory tract infections; Polymerase chain reaction; Respiratory system; Gene; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001418764,0.0001515223,0.0002919283,0.0001170547,0.0003457063,0.0003476708,0.0005209064,0.00007516699,0.0002303591],"category_scores_gemma":[0.0001130418,0.0001109636,0.0001333436,0.001406915,0.000842892,0.0006897738,0.0004590345,0.0003693489,0.00006970853],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003246377,"about_ca_system_score_gemma":0.001678941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002307964,"about_ca_topic_score_gemma":0.00005894769,"domain_scores_codex":[0.9978858,0.00005642049,0.0002907468,0.0006676504,0.0007569449,0.0003424818],"domain_scores_gemma":[0.9988887,0.0001053908,0.00006898954,0.0004505151,0.0002983744,0.0001879945],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0007906872,0.0003251356,0.1294476,0.0004885002,0.0008502261,0.0001106027,0.002849706,0.0004995029,0.8356393,0.001354816,0.003153612,0.02449035],"study_design_scores_gemma":[0.002901707,0.003077633,0.2791277,0.001029936,0.0004329281,0.00003641125,0.0008170115,0.02580137,0.6753156,0.0002175212,0.01066469,0.0005774837],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.99347,0.0005190377,0.001486991,0.00009662724,0.0001590661,0.0009494577,0.00004877088,0.0000839757,0.003186139],"genre_scores_gemma":[0.9903602,0.00003800074,0.008705199,0.0002427549,0.0001288367,0.0000793958,0.00001134785,0.00002351882,0.0004107544],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.1603237,"threshold_uncertainty_score":0.4524963,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0556003446904459,"score_gpt":0.3813937589811529,"score_spread":0.325793414290707,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}