{"id":"W4400451719","doi":"10.1089/phage.2023.0041","title":"The TolC and Lipopolysaccharide-Specific <i>Escherichia coli</i> Bacteriophage TLS—the <i>Tlsvirus</i> Archetype Virus","year":2024,"lang":"en","type":"article","venue":"PHAGE","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":6,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph; St Joseph's Health Centre; University of Toronto","funders":"School of Life Sciences, Arizona State University; University of Toronto; National Institute of General Medical Sciences; Arizona State University","keywords":"Escherichia coli; Archetype; Lipopolysaccharide; Bacteriophage; Microbiology; Virology; Virus; Biology; Philosophy; Genetics; Immunology; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.0003314892,0.0002266829,0.0001422426,0.00001915377,0.0007046726,0.0006548349,0.0004048778,0.00006412252,0.002487954],"category_scores_gemma":[0.0000156436,0.0001370371,0.0001107727,0.0002285779,0.0004365646,0.0003892641,0.0003395142,0.0004392664,0.002224014],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00009466276,"about_ca_system_score_gemma":0.00001430298,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005568865,"about_ca_topic_score_gemma":0.0005499148,"domain_scores_codex":[0.9986352,0.00008971793,0.0002662203,0.0004182818,0.0001747829,0.0004158195],"domain_scores_gemma":[0.9991452,0.0002429769,0.00005254889,0.0004305368,0.000006878963,0.0001218685],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0000234069,0.00002890916,0.00002978224,0.000007931682,0.00002298725,0.00002997297,0.0005168567,0.000002586156,0.9472316,0.0004185443,0.02318319,0.02850424],"study_design_scores_gemma":[0.00009890527,0.00003559073,0.005221879,0.00001891187,0.00002710706,0.00005974527,0.00008018963,0.0001588349,0.06701498,0.0001763097,0.9269246,0.0001829515],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9780269,0.004270871,0.0003312824,0.00319587,0.001811024,0.0004263781,0.00008065647,0.0001788008,0.01167817],"genre_scores_gemma":[0.9867511,0.002332972,0.0001663611,0.001438359,0.0002716323,0.00005493223,0.000006956355,0.00004497399,0.008932687],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9037414,"threshold_uncertainty_score":0.9985529,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009666008014899337,"score_gpt":0.2284276671314858,"score_spread":0.2187616591165865,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}