{"id":"W4400601841","doi":"10.1016/j.celrep.2024.114479","title":"Multiple transatlantic incursions of highly pathogenic avian influenza clade 2.3.4.4b A(H5N5) virus into North America and spillover to mammals","year":2024,"lang":"en","type":"article","venue":"Cell Reports","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Toronto; Sunnybrook Health Science Centre; University of Manitoba; University of Prince Edward Island; Canadian Science Centre for Human and Animal Health","funders":"Department of Energy, Environment and Climate Action; National Institute of Allergy and Infectious Diseases; Canadian Wildlife Health Cooperative; Canadian Institutes of Health Research; Environment and Climate Change Canada; University of Toronto; Defence Research and Development Canada; Parks Canada; National Institutes of Health; National Science Foundation","keywords":"Influenza A virus subtype H5N1; Biology; Clade; Highly pathogenic; Virology; Transmission (telecommunications); Neuraminidase; Virus; Viral evolution; Virulence; H5N1 genetic structure; Influenza A virus; Zoology; Oseltamivir; Phylogenetics; Gene; Infectious disease (medical specialty); Genome; Disease; Genetics; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.0002093057,0.0003033472,0.0006314811,0.0004072211,0.0001275529,0.00004086039,0.00009730805,0.0001161332,0.00009958383],"category_scores_gemma":[0.0005045133,0.0002481501,0.0001924767,0.0006782375,0.0002670704,0.0001199363,0.0001699393,0.0003709322,0.0001120018],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001202548,"about_ca_system_score_gemma":0.0002648005,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0009846267,"about_ca_topic_score_gemma":0.0002563902,"domain_scores_codex":[0.9972795,0.00005817518,0.0008209417,0.0006535585,0.0006569494,0.0005309297],"domain_scores_gemma":[0.998377,0.0002069042,0.0001340635,0.000633448,0.0001956667,0.000452966],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003741108,0.0003368574,0.1565731,0.001825819,0.0003356422,0.007864141,0.006592799,0.00008034059,0.8023332,0.000009945837,0.004508986,0.01916504],"study_design_scores_gemma":[0.001341841,0.001273697,0.341849,0.0009663723,0.000592986,0.0005240008,0.000452555,0.000280614,0.1485595,0.0001213878,0.503273,0.0007651238],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9906358,0.006301082,0.0001473881,0.0003427507,0.0002170532,0.000953205,0.00004882724,0.0001273712,0.00122658],"genre_scores_gemma":[0.9962646,0.0008232748,0.0011442,0.0007975514,0.0001348881,0.00007143761,0.00002818943,0.00006024072,0.0006756284],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6537737,"threshold_uncertainty_score":0.9999971,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03034505185599631,"score_gpt":0.3201448692990534,"score_spread":0.2897998174430572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}