{"id":"W4400601841","doi":"10.1016/j.celrep.2024.114479","title":"Multiple transatlantic incursions of highly pathogenic avian influenza clade 2.3.4.4b A(H5N5) virus into North America and spillover to mammals","year":2024,"lang":"en","type":"article","venue":"Cell Reports","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":41,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan; University of Toronto; Sunnybrook Health Science Centre; University of Manitoba; University of Prince Edward Island; Canadian Science Centre for Human and Animal Health","funders":"Department of Energy, Environment and Climate Action; National Institute of Allergy and Infectious Diseases; Canadian Wildlife Health Cooperative; Canadian Institutes of Health Research; Environment and Climate Change Canada; University of Toronto; Defence Research and Development Canada; Parks Canada; National Institutes of Health; National Science Foundation","keywords":"Influenza A virus subtype H5N1; Biology; Clade; Highly pathogenic; Virology; Transmission (telecommunications); Neuraminidase; Virus; Viral evolution; Virulence; H5N1 genetic structure; Influenza A virus; Zoology; Oseltamivir; Phylogenetics; Gene; Infectious disease (medical specialty); Genome; Disease; Genetics; Coronavirus disease 2019 (COVID-19)","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005442024,0.0002260802,0.0001972935,0.0003058792,0.0004280605,0.0005400471,0.0002022756,0.0002971154,0.001620805],"category_scores_gemma":[0.0002795052,0.0001023416,0.0002048256,0.0002389325,0.000241806,0.000287286,0.0003553481,0.0004341961,0.0002878387],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003436663,"about_ca_system_score_gemma":0.0003088909,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.007264002,"about_ca_topic_score_gemma":0.01667796,"domain_scores_codex":[0.9997789,0.00003582926,0.00001503525,0.00007546718,0.00004511938,0.00004962384],"domain_scores_gemma":[0.9996678,0.00003420435,0.00008561723,0.00002637985,0.0001007618,0.00008531663],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0008457534,0.0002517964,0.5141806,0.0002491403,0.0002292078,0.003421027,0.002421779,0.00007941917,0.4298445,0.0002863843,0.001242679,0.04694773],"study_design_scores_gemma":[0.00001595281,0.001113221,0.961886,0.00005056629,0.0001090558,0.004393383,0.003923405,0.0001275116,0.02075421,0.00008942817,0.007520423,0.00001670253],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9963369,0.001550181,0.0002044268,0.0001149071,0.00003449999,0.00001382957,0.0001169958,0.000007741897,0.001620544],"genre_scores_gemma":[0.9958993,0.001467611,0.0004115645,0.000202153,0.00002890222,0.00001222462,0.0003205684,0.000002785091,0.001654923],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.992736,"threshold_uncertainty_score":0.0144434,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03034505185599631,"score_gpt":0.3201448692990534,"score_spread":0.2897998174430572,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}